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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso29g00198 ATGAACGAGGTGATCACCATCGCTGATGCGGCGTACCGCATTAGCAAGGCGACGGATACGGCGGCGACACCTTCGTCTTCAGTTCAGGTCCTCCCGTACAGTGTCCCGCTGTTATCTGCATTCCTTGCCTTTGCGATTGCTCAATTCCTAAAGGTCATCACCACCTGGTATAAAGAAAAGAGATGGGATCCTAAAAAGATTGTGGGTTCTGGTGGAATGCCATCATCTCATTCTTCAACTGTTGTGGCACTAGCAGTATCCATTGGTCTACATGATGGGGTTGAATCATCATCATTTGCAATTGCTGTTGTTATGGCTTTTATTGTTATGTATGATGCATCTGGAGTCAGACTCCATGCCGGTCGCCAGGCTGAATTGTTGAACCAGATTGTCTGTGAATTTCCTCCTGAGCACCCGTTATCCACATCTAGACCTCTACGTGATTCTCTTGGGCATACTCCATTACAGGTGATTGCGGGGGCCATGTTAGGGTTCATAGTGGCATTAATGATGAAAGCATCCGAGTAG 528 47.35 MNEVITIADAAYRISKATDTAATPSSSVQVLPYSVPLLSAFLAFAIAQFLKVITTWYKEKRWDPKKIVGSGGMPSSHSSTVVALAVSIGLHDGVESSSFAIAVVMAFIVMYDASGVRLHAGRQAELLNQIVCEFPPEHPLSTSRPLRDSLGHTPLQVIAGAMLGFIVALMMKASE 175
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso29g00198 175 CDD PAP2-like 37 169 - -
Smso29g00198 175 PANTHER ACID PHOSPHATASE-VANADIUM-DEPENDENT HALOPEROXIDASE-RELATED PROTEIN 7 173 IPR003832 -
Smso29g00198 175 Pfam Divergent PAP2 family 36 167 IPR003832 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso29g00198 K09775 uncharacterized protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr23:66191080 Smso29g00198 Smso-Chr29:3178579 dispersed
Smso Smso-Chr26:7416151 Smso29g00198 Smso-Chr29:3178579 dispersed
Smso Smso-Chr29:3178579 Smso2g02775 Smso-Chr2:115380356 dispersed
Smso Smso-Chr29:3178579 Smso7g00158 Smso-Chr7:2813161 wgd