AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso29g00199 ATGACGGTGAAGAAGAGATTTATAAATGCCGCTTCGAGACGCCATATCTCGCCGTTAGTTTTGAAGTTTCTGATCTTATTGTTGATACTATTTTGTTTCGTCGTTTTTTTCGGATTATTCTCTCAATTTAAGCTTCAATCGGCGTCTAGCGCCACTGATTTCGGTTTTGACGGATTCCGTCTCGAAAGTTATGGTTTGAAGATTGCTTTCCTTTTCCTTGTTCGTGATAATCTTCCTATAGATTTCCTCTGGCACAACTTCTTTAAGAATGCAGATCCTGAGAAATTCTCAATTTACGTACACTCAAAGCCTGGTTTTGTGTTCGATGCGTCATCTACCAGATCAGTATTTTTCTACAACCGACAGTTGGAAAACAGTGTTGAGGTGGGCTGGGGTAAGCCAACTATGATTGAAGCAGAAAAGTTGTTGTTCAAGGCAGCCCTTGATGATCAACGCAATCATATATTTGTTCTTCTTTCTGACAGTTGTGTCCCCCTATACGATTTCAGTTACATATACACATATTTAACATCATCTCCAAGAAGTTTCGTGGACAGCTTTATTGATGCCACGGAGGAACGTTATAATCCAGAGATGTCTCCTGACATACCTGAAGACAAATGGCGGAAAGGATCCCAGTGGATCACATTGGTCAGAAGGCATGCAGAAGTGGTTGCATATGATCATGTTGTTTTCCCAGTATTTAACAAACACTGCAAGCGGCGGCCGCTTCTAGACCTGAGCAAGGGAAACGAGTCTCTTAAAGAGCAGCAGCAACACAATTGCATCCCTGATGAACATTATGTCCCCACCTTACTTGCAATGCGTGGATTGGAAGATGAATTGGTGAGAAGAACATTGACTTATTCTTTATGGAACCAGTCTACTGAAACGATGAACACACAAGCCTGGCACCCTGTAACGTTTGGTTATGCAAGTGCTAGCCAGAAAAACATTCAAGATATTAAGGATATTGACCATGTTTATTTCAAGCCTGAGAACCGGACCGAATGGTGCAGTCATGATGCTAAATCTAGCATGAGACCATGTTACTTGTTTGCAAGGAAGTTCACTCGTGGTGCAGCCATGCGCCTTTTGACGAACGGTGTGGTGGGTCCATATGATCCCAATACATTGTTTATAGATCCGACATAG 1155 42.16 MTVKKRFINAASRRHISPLVLKFLILLLILFCFVVFFGLFSQFKLQSASSATDFGFDGFRLESYGLKIAFLFLVRDNLPIDFLWHNFFKNADPEKFSIYVHSKPGFVFDASSTRSVFFYNRQLENSVEVGWGKPTMIEAEKLLFKAALDDQRNHIFVLLSDSCVPLYDFSYIYTYLTSSPRSFVDSFIDATEERYNPEMSPDIPEDKWRKGSQWITLVRRHAEVVAYDHVVFPVFNKHCKRRPLLDLSKGNESLKEQQQHNCIPDEHYVPTLLAMRGLEDELVRRTLTYSLWNQSTETMNTQAWHPVTFGYASASQKNIQDIKDIDHVYFKPENRTEWCSHDAKSSMRPCYLFARKFTRGAAMRLLTNGVVGPYDPNTLFIDPT 384
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso29g00199 384 Pfam Core-2-I-Branching enzyme 68 322 IPR003406 GO:0016020(InterPro)|GO:0016757(InterPro)
Smso29g00199 384 PANTHER CORE-2-I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 52 366 IPR044174 GO:0016757(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso29g00199 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr10:232544 Smso29g00199 Smso-Chr29:3184749 dispersed
Smso Smso-Chr20:546479 Smso29g00199 Smso-Chr29:3184749 dispersed
Smso Smso-Chr29:3184749 Smso6g01277 Smso-Chr6:17733162 dispersed
Smso Smso-Chr29:3184749 Smso7g00159 Smso-Chr7:2820498 wgd