AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso29g00202 ATGGACTTCGATATACCGACGGATCTCATCGATAAAGCTCAGATCGGATTCCGAGCAGCCGCCGGACTGTCATCTTTTGACCGGAAATACACAACTCTACCGTCCATTTCTACCGTCGAAGCATCGATATCCTCCTTAGACCCGTCTCCGTCGTACCTGAGATGCAAACTCTGTCAAGGTAAGCTCCTGAGAGGCATACAGTCACTGATTTGCATTTACTGTGGGGAAAACCAGAAGAAGGATCTACATCCGGACCCTATCTCCTTCAATTCCACCCATGGTTATAGCTGGTTACTTCAATCATTGAACTTCAACGGATCGGAAAGAATTGGGTCATTAGCTGAAGGAAGTGAAATAAGCGGAGGGCAGAGTCCTGCAGAAGATGAGTTAACTTTATCTGAGCTTCTAGATTTGAAAATTTCATGGCAGCATGAGCCTGAAAAACTTCAAAATAGTTTCAATATCAAAACCTCTGAACATAACAGTTCTTTAGATCTTGGTACAACCGATTTTGACCACTTCTTTTCGAAGTCAATGCAAAAGAGTGCAACTGTGTCTGATGTACTCGAAGAACAACCAGTTGCCAGTAAAGCAGATCAACATATGATCATTGAGGGCCAAGAAAATATTACTTCTGATTGGAATGCAGAATTTCAATTTGCAGACACCAAAAAGGAAAATGAGAAGCTCGAATCAGTTGACCTGTTTGAAGGTGCTGAAACTGACCTGTCTGCCCACATGGATGTGGCTTTTGGACAGACAGAAAGCTATGATTTAAAAAAACCGAATGATGATTCAGACCCATTTCAAGATGACCTTTTTGTCAACATGAGTTCTGCAACTTTTCAGCAGAATGAGCAGTTGGATTCTGTTGTTCGAGCAAAAGATGGTCTATCTGGTGACCTAGACGATTTGAACATAAAAAATGTGGATGGAGACTGGCTTAGTGATGGTAATTGGCAGAAAAGTAGTGTAAAAAGCACATTAAATGATGTGTCCTTGCAGGATAACCCAAATGATTCATCAACAGATTGGTTTGAAAACGCTAATTGGCAGAAAAGTAGTGCCAACAACACGGCTACCATTAAAGATGATAATTACACATCAAACGATGGATCCTTACAGGATAATCCAAATGACATATCAACAGATTGGTTTGAAGATACTAACTGGCCGAAAGTTAGTCCCACCAACAACAACACGGCTACCATTAAAGATGATAATTTATTTGATAGTAAACCACATGCAAATGACTTGATTCAGTCTGAAAAGTCGGATCTTGATAATTCAGACAAACACCATTCAGACGTTACTGACTGGTTTCAAAATAATCAGTGGGCGATTGGTGGTTCTAGTTCTACAACCAATATTGTGGTCAGCAAAGACGATGATGATGATGATGATGGGTTTGGTGATTGGAATGATTTTACAAGCTCAACTGGTAATCAAGATTCTTTGCAAGATTCTTGGAAAGAAAGTGGTATTGAGAAAGTGGATTTTGGTACTAGTGAAAAGATGTCAGAATTAAAATTGTTTCAATCTGCAGTTGATTCACAGGAAGTGGATTTTGGCAACTTCTTGCAGTCTGATATATTTTCGGGTGACAAAAATTCAAATGATACTCCGGCAGCTTATGATATCTTTTCAGAAGCATCTACAACAGTCAGGAATGCTAATATTGAAGATGGAGATAATGCCGAGGGATCAAAGAATGACGAAATTACCCCTAATGCAACCGCAAGTCTAAAAGATGTACAAATGCTAATGTCACAGATGCATGACCTGTCATTCATGCTTAAAAACGAGCTTTCAGTTCCCTCAAAGCCCGATGATATTGGCACATCTCACAGTTAA 1854 39.86 MDFDIPTDLIDKAQIGFRAAAGLSSFDRKYTTLPSISTVEASISSLDPSPSYLRCKLCQGKLLRGIQSLICIYCGENQKKDLHPDPISFNSTHGYSWLLQSLNFNGSERIGSLAEGSEISGGQSPAEDELTLSELLDLKISWQHEPEKLQNSFNIKTSEHNSSLDLGTTDFDHFFSKSMQKSATVSDVLEEQPVASKADQHMIIEGQENITSDWNAEFQFADTKKENEKLESVDLFEGAETDLSAHMDVAFGQTESYDLKKPNDDSDPFQDDLFVNMSSATFQQNEQLDSVVRAKDGLSGDLDDLNIKNVDGDWLSDGNWQKSSVKSTLNDVSLQDNPNDSSTDWFENANWQKSSANNTATIKDDNYTSNDGSLQDNPNDISTDWFEDTNWPKVSPTNNNTATIKDDNLFDSKPHANDLIQSEKSDLDNSDKHHSDVTDWFQNNQWAIGGSSSTTNIVVSKDDDDDDDGFGDWNDFTSSTGNQDSLQDSWKESGIEKVDFGTSEKMSELKLFQSAVDSQEVDFGNFLQSDIFSGDKNSNDTPAAYDIFSEASTTVRNANIEDGDNAEGSKNDEITPNATASLKDVQMLMSQMHDLSFMLKNELSVPSKPDDIGTSHS 617
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso29g00202 617 MobiDBLite consensus disorder prediction 473 487 - -
Smso29g00202 617 PANTHER DENTIN SIALOPHOSPHOPROTEIN-RELATED 1 413 - -
Smso29g00202 617 MobiDBLite consensus disorder prediction 461 487 - -
Smso29g00202 617 MobiDBLite consensus disorder prediction 356 407 - -
Smso29g00202 617 MobiDBLite consensus disorder prediction 356 414 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso29g00202 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
148128 Smso18g01476 Smso29g00202
153430 Smso29g00202 Smso9g00737
431875 Smso26g01972 Smso29g00202
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr22:69720099 Smso29g00202 Smso-Chr29:3221751 dispersed
Smso Smso-Chr29:3221751 Smso4g00266 Smso-Chr4:3390399 dispersed
Smso Smso-Chr18:72529257 Smso29g00202 Smso-Chr29:3221751 wgd
Smso Smso-Chr26:42648170 Smso29g00202 Smso-Chr29:3221751 wgd
Smso Smso-Chr29:3221751 Smso7g00162 Smso-Chr7:2845748 wgd
Smso Smso-Chr29:3221751 Smso9g00737 Smso-Chr9:17136407 wgd