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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso29g00210 ATGATTTACCTATTTTTCGCTGTTCTATTCGTCGAAATGTTGATGATTCTGTTACTTTTGTTCAAAACTCCACTCCGAAAGCTTTTGATAATCGGATTAGATCGTGCTAAACGAGGAAGAGCTCCGTTGGTTGTGAAATCCGTCGGCGCCACCGTTTTTGTAATCATGATGTACAACGTGTACAGTGTAACGGAAATCCAGAGCCGTCCGGCTGACGTCATTAACCCTACCGATCAAATCATCCTTGCTTACCACATGCTCGAAGCGTCTCTCATGGGATTCTCCCTTTTCTTATCACTAATGATAGATAGACTACATCATTACATAAGAGAACTTCGAATACTTAGAAAAACCATGGAAGCTGCAAAGAAACAAAACAGAGCAGCAGAAGAAACCAAGAACAAATGCGCAGATGAGGTTAAAATCCTAAATGATGAATTATCGAAACTGAAAACACAAATTAAACAACTGGAATCTGAACATGAAACAAAGGAAAAAGAGATCAAATCTGCGGAAGCTAATTCACTTGCTCTCAAGAACCAATCAGAAGGCTTTCTTCTCGAATATGATCGTTTGTTAGCAGAAAATCAAACTCTTAGAGATCAGTTGCGGGCCATTGATGAAAGTGTATCTCATTCTACTGGAAAGAAGAATATGTGA 660 39.09 MIYLFFAVLFVEMLMILLLLFKTPLRKLLIIGLDRAKRGRAPLVVKSVGATVFVIMMYNVYSVTEIQSRPADVINPTDQIILAYHMLEASLMGFSLFLSLMIDRLHHYIRELRILRKTMEAAKKQNRAAEETKNKCADEVKILNDELSKLKTQIKQLESEHETKEKEIKSAEANSLALKNQSEGFLLEYDRLLAENQTLRDQLRAIDESVSHSTGKKNM 219
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso29g00210 219 Coils Coil 105 181 - -
Smso29g00210 219 Coils Coil 189 209 - -
Smso29g00210 219 FunFam B-cell receptor-associated protein 29 136 199 - -
Smso29g00210 219 PANTHER BCR-ASSOCIATED PROTEIN, BAP 1 200 IPR008417 GO:0005783(InterPro)|GO:0005789(PANTHER)|GO:0006886(InterPro)|GO:0006888(PANTHER)|GO:0016020(InterPro)|GO:0070973(PANTHER)
Smso29g00210 219 Gene3D - 136 199 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso29g00210 K14009 B-cell receptor-associated protein 31
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Event-related genes

Select Gene_1 Gene_2 Event_name
142990 Smso10g03317 Smso29g00210
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr10:246937 Smso29g00210 Smso-Chr29:3338425 dispersed
Smso Smso-Chr18:75842527 Smso29g00210 Smso-Chr29:3338425 dispersed
Smso Smso-Chr1:95677052 Smso29g00210 Smso-Chr29:3338425 dispersed
Smso Smso-Chr20:590965 Smso29g00210 Smso-Chr29:3338425 dispersed
Smso Smso-Chr20:18089720 Smso29g00210 Smso-Chr29:3338425 dispersed
Smso Smso-Chr10:88331613 Smso29g00210 Smso-Chr29:3338425 wgd
Smso Smso-Chr29:3338425 Smso7g00169 Smso-Chr7:2983338 wgd