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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso29g00218 ATGAAATACAATGAAATCTCCCATTTTAGCCACCCTCAACACCGGCTTAAACCGGGCTACACCGAGGTCCCATTCAAGTGTGACGGGTGCAAGGAAGTCGGCATAGGGTCCAACTACAAATGCACAACATGCAACTATGATTTACATGTCCATTGCGCCCTCCTGTCCCCTTCCATCACCCACCCATTCTACACCAAGTGTTCATTCCAGTTTCTATCGCGCCCTCCTGGCCCTATACCGCGATACTGCAACGCGTGCGAGAAAGCAGTGCCAGGGTTCGTTTACCACTGCAAGTTGTGCGGGTTCGACCTTCACCCATGTTGCGCCAAGCTTCCAACTATGTTGGATGACGGTGAGGTGGAGTTGTACTTGTACCGAAAAGTAGGGTCTGCCTGCCATAAGTGTGGCAGGAAAGGACGAAGTTGGAGTTACAGGTCAAAGTGCAAGAAGTACAACCTACATGTGGCATGTGTGAAAGAGATGTTAGTGGAGAGTTGGCATGAAATATACTTTGGTAGGAGTGGGTCGAGTGGTAATTATGGTGATTTGCATGGGCAAAATGGGAAATTCGAGACAAGAATTCCAAGCTTGAAGGGTACATTGGAAAGCTATCACCATAATCATCATCATCAAAGCAAAGGGAAAGTGAAGAAATGTTGTGAGATGGCTGGTTTGGCAATGCAGTTTGTAATTTCAGCTGTTCTTGGTGATCCGACCACTCTAATTGCCAGTGTTGTTGGTGCTTTGATGTCTAAATAG 759 47.04 MKYNEISHFSHPQHRLKPGYTEVPFKCDGCKEVGIGSNYKCTTCNYDLHVHCALLSPSITHPFYTKCSFQFLSRPPGPIPRYCNACEKAVPGFVYHCKLCGFDLHPCCAKLPTMLDDGEVELYLYRKVGSACHKCGRKGRSWSYRSKCKKYNLHVACVKEMLVESWHEIYFGRSGSSGNYGDLHGQNGKFETRIPSLKGTLESYHHNHHHQSKGKVKKCCEMAGLAMQFVISAVLGDPTTLIASVVGALMSK 252
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso29g00218 252 ProSiteProfiles Zinc finger phorbol-ester-DAG-type profile. 13 67 IPR002219 -
Smso29g00218 252 PANTHER CYSTEINE-HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN 2 250 - -
Smso29g00218 252 SUPERFAMILY Cysteine-rich domain 36 114 IPR046349 -
Smso29g00218 252 Gene3D - 12 59 - -
Smso29g00218 252 Gene3D - 79 111 - -
Smso29g00218 252 Pfam C1 domain 74 109 IPR004146 -
Smso29g00218 252 Pfam C1 domain 9 53 IPR004146 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso29g00218 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
143054 Smso10g03423 Smso29g00218
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr29:3498520 Smso5g00370 Smso-Chr5:7073588 dispersed
Smso Smso-Chr10:89631919 Smso29g00218 Smso-Chr29:3498520 wgd
Smso Smso-Chr16:76216835 Smso29g00218 Smso-Chr29:3498520 wgd
Smso Smso-Chr29:3498520 Smso7g00177 Smso-Chr7:3121563 wgd