AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso29g00220 ATGGATGAAACGGAGAAGCCGTCGGAAGCCAAGAGAACCACCGTCGGGCCACCCTCCGTTTTGGCCTACCTCGATCCTAATTACTGGAATGAGAGGTTCAGTTCTGAGGATCATTACGAATGGCTTAAAGATTACTCTCATTTTCGTCATCTGATCCAGCACCACATCAAACCTGATTCTTCAGTATTGGAGCTTGGGTGTGGAAACTCACAACTGTGTGATGAGTTATATAAAGATGGAATTACTAATTTGACCTGCATTGATCTATCTTCGGTTGCAGTTGCGAAAATGCAAAAACGGTTGTTTTCTAAAGGCTACAAAGATGTCAAAGTATTGGAAGGCGATATGTTGAATCTTTCCTTTGCTGATGAATCGTTTGATGTTGTTATAGAGAAAGGAACCATGGATGTTTTGTTCGTGGACAGTGGTGACCCGTGGAACCCACGACCTGAGGCTGTAAACAAAGCAATGGCGATGCTTCAAGGCGTTCATAGGGTTCTAAAACCCCATGGGATTTTTATCTCAATCGCTTTTGGTCAGCCACATTTCAGGCGTCCATTATTTAATGCTCCTGAGTTTACATGGTCCATTGACTACACTACATTTGGAGATGGATTTCATTATTTCTTTTATATCTTGAGGAAGGGATGCAAACCATTAGATGCCAATGCAGATGTCAAGAAAGTTGAGACACCATCTCTATGCCTTTATCAAGATGAATTGGATGATGAAGATTATTTATTTCGTACCAACATCGATGAAATTGATGATCAAATATGA 780 41.03 MDETEKPSEAKRTTVGPPSVLAYLDPNYWNERFSSEDHYEWLKDYSHFRHLIQHHIKPDSSVLELGCGNSQLCDELYKDGITNLTCIDLSSVAVAKMQKRLFSKGYKDVKVLEGDMLNLSFADESFDVVIEKGTMDVLFVDSGDPWNPRPEAVNKAMAMLQGVHRVLKPHGIFISIAFGQPHFRRPLFNAPEFTWSIDYTTFGDGFHYFFYILRKGCKPLDANADVKKVETPSLCLYQDELDDEDYLFRTNIDEIDDQI 259
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso29g00220 259 Pfam Methyltransferase domain 57 177 IPR025714 -
Smso29g00220 259 FunFam EEF1A lysine methyltransferase 4 21 232 - -
Smso29g00220 259 CDD AdoMet-MTases 62 178 - -
Smso29g00220 259 Gene3D Vaccinia Virus protein VP39 21 229 IPR029063 -
Smso29g00220 259 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 27 210 IPR029063 -
Smso29g00220 259 PANTHER SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 15 216 IPR051419 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso29g00220 K22857 EEF1A lysine methyltransferase 4 [EC:2.1.1.-]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr29:3551470 Smso29g01652 Smso-Chr29:43744522 dispersed
Smso Smso-Chr29:3551470 Smso7g00179 Smso-Chr7:3145736 wgd