AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso29g00230 ATGGCTTCTTCTTCTTCTTCCGCTTGCAGCTTCATCTTCTACGCTCTATTGCTTATACAACTTTGCAGTGCTCGTGAGATAGTGGACAAGAACCAGAACAACGATCAAAAAGAAGAAAATCATATAGATATTTATGGGAAGAATGGTGTTTATGATTTGGATCCGGCTCTAAATGTGTTCTTTCATGTGAATGATTTATATTCGGGCAAGAAAATGCCAATTTATTTCGCGGTTAATGATCCTTCAACAACTCCTCGGTTGTTAACTAGAGAACAATCCGATTTGATACCATTTTCCTCAAAAAAACTCGCGTATCTTCTAGAATTGATATCATTAGTTGAGGGTTCGCCTCAAGCTCTAGCCATGGAGCAAACACTCAAACAGTGTGAGCTTGAGGCAACCCCTGGGGAGACAAGGTTTTGCGCTAGCTCGTTAGAGTCCATGCTGGACTCTACACGAGGGATATTGGGTATGGTCAAAATAAAGGCGTTGACCACCAATATCCGTAATTTGTCTAGTACCCTTTTGCAAGGGTACACCTTTTTGAAGGAGCCATTGGAGATTAATGTTTCTGATATGGTGGCTTGTCATACCATGGCCTATCCTTATGCGGTTTACTATTGTCATGGTCAAAAGGGGTATAATAGGGTTTTTGAGATATCTTTGGGTGGTGAAAATGGAAATATAGTGGATGCTATTGCTGTCTGCCACATGGACACTTCCATGTGGGATAGTGATCACGTGGCGTTTCGTGTGCTCGGAGGCCAGCCTGGCAGCTCGCCGGTGTGCCATTTTCTCCCTGCCGATAATATTGTGTGGATACCATCACCATAG 834 43.05 MASSSSSACSFIFYALLLIQLCSAREIVDKNQNNDQKEENHIDIYGKNGVYDLDPALNVFFHVNDLYSGKKMPIYFAVNDPSTTPRLLTREQSDLIPFSSKKLAYLLELISLVEGSPQALAMEQTLKQCELEATPGETRFCASSLESMLDSTRGILGMVKIKALTTNIRNLSSTLLQGYTFLKEPLEINVSDMVACHTMAYPYAVYYCHGQKGYNRVFEISLGGENGNIVDAIAVCHMDTSMWDSDHVAFRVLGGQPGSSPVCHFLPADNIVWIPSP 277
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso29g00230 277 ProSiteProfiles BURP domain profile. 60 276 IPR004873 -
Smso29g00230 277 SMART BURP-2 58 276 IPR004873 -
Smso29g00230 277 PANTHER BURP DOMAIN PROTEIN USPL1-LIKE 38 276 IPR044816 -
Smso29g00230 277 Pfam BURP domain 59 274 IPR004873 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso29g00230 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
148110 Smso18g01431 Smso29g00230
153431 Smso29g00230 Smso9g00769
431901 Smso26g02063 Smso29g00230
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr29:3622057 Smso9g00769 Smso-Chr9:18322230 dispersed
Smso Smso-Chr29:3622057 Smso29g00232 Smso-Chr29:3677373 proximal
Smso Smso-Chr18:71753448 Smso29g00230 Smso-Chr29:3622057 wgd
Smso Smso-Chr26:47413736 Smso29g00230 Smso-Chr29:3622057 wgd
Smso Smso-Chr29:3622057 Smso7g00189 Smso-Chr7:3235190 wgd