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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso29g00252 ATGTTTTCTTCCTATAAATACCCCTCCTCGTCACCTTTTCTTCACAGAACTTGCAACAACTTCACTAACTCAAAAATGGCCAAAAATTCAGTTGCTTTCTTTGCATTTCTTCTGCTTCTCTTCGTTCTTGCTATCTCAGAAATCGGATCGGTGAAGGGAGAATTATGTGAGAAAGCGAGCAAGACATGGTCCGGAAACTGTGGCAACACAAGACACTGTGACGACCAGTGCAAGTCTTGGGAGGGTGCAGCCCATGGAGCTTGTCACGTGCGCGACAAGAAACACATGTGCTTCTGCTACTTCAACTGTCCCAAAGCCCAGAAGTTGGCTCAAGATAAACAGAAAGCCGAAGAGCTCGCTAAGAAGAAGATTGAAGCTGAAAAGAGGTCGGGCAGTGGGATGTCGGCGCGGGGTGGTTGA 420 47.38 MFSSYKYPSSSPFLHRTCNNFTNSKMAKNSVAFFAFLLLLFVLAISEIGSVKGELCEKASKTWSGNCGNTRHCDDQCKSWEGAAHGACHVRDKKHMCFCYFNCPKAQKLAQDKQKAEELAKKKIEAEKRSGSGMSARGG 139
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso29g00252 139 Coils Coil 106 129 - -
Smso29g00252 139 Gene3D - 55 103 IPR036574 -
Smso29g00252 139 SUPERFAMILY Scorpion toxin-like 54 103 IPR036574 -
Smso29g00252 139 PANTHER DEFENSIN-LIKE PROTEIN 1 26 103 - GO:0006952(PANTHER)
Smso29g00252 139 SMART gth-4 55 103 IPR003614 GO:0006952(InterPro)
Smso29g00252 139 Pfam Gamma-thionin family 55 103 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso29g00252 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr29:3981323 Smso29g00252 Smso-Chr29:3996830 dispersed
Smso Smso-Chr29:3996830 Smso7g00207 Smso-Chr7:3568435 dispersed
Smso Smso-Chr29:3989602 Smso29g00252 Smso-Chr29:3996830 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Smso29g00246 . 13 78 Plant Defensins gene family AT1G19610 54.545 5.87e-24 85.9
Smso29g00247 WGDA 1 78 Plant Defensins gene family AT1G19610 44.872 4.63e-20 78.6
Smso29g00248 . 23 78 Plant Defensins gene family AT1G19610 49.123 6.41e-09 50.1
Smso29g00249 . 1 78 Plant Defensins gene family AT1G19610 51.282 6.53e-26 91.7
Smso29g00250 . 1 78 Plant Defensins gene family AT1G19610 51.282 1.07e-25 91.3
Smso29g00251 . 1 78 Plant Defensins gene family AT1G19610 51.282 6.53e-26 91.7
Smso29g00252 . 1 78 Plant Defensins gene family AT1G19610 51.282 9.22e-26 91.3
Smso26g02027 . 3 78 Plant Defensins gene family AT1G19610 37.975 8.92e-07 44.7
Smso26g02030 . 3 78 Plant Defensins gene family AT1G19610 37.975 6.78e-07 44.7
Smso26g02033 . 3 78 Plant Defensins gene family AT1G19610 37.975 9.27e-07 44.3
Smso26g02036 . 3 78 Plant Defensins gene family AT1G19610 37.975 6.78e-07 44.7
Smso26g02039 . 3 78 Plant Defensins gene family AT1G19610 37.975 8.57e-07 44.7
Smso26g02042 . 3 78 Plant Defensins gene family AT1G19610 37.975 9.58e-07 44.3
Smso26g02045 . 3 78 Plant Defensins gene family AT1G19610 37.975 9.06e-07 44.7
Smso26g02046 WGDA 16 78 Plant Defensins gene family AT1G19610 48.438 3.05e-16 66.6
Smso26g02047 WGDA 24 78 Plant Defensins gene family AT1G19610 47.273 2.56e-11 57.4
Smso24g01897 SST 2 77 Plant Defensins gene family AT2G02130 55.696 1.29e-22 81.6
Smso21g00236 ACH,SST,WGDA 1 77 Plant Defensins gene family AT2G02100 61.039 1.76e-29 98.2
Smso21g00240 . 1 77 Plant Defensins gene family AT2G02100 48.101 1.50e-20 86.3
Smso21g00241 . 1 77 Plant Defensins gene family AT2G02100 61.039 1.76e-29 98.2
Smso13g00073 . 26 78 Plant Defensins gene family AT1G19610 41.509 9.70e-07 42.7
Smso7g00207 . 13 78 Plant Defensins gene family AT1G19610 54.545 1.00e-23 85.5
Smso7g00208 . 1 78 Plant Defensins gene family AT1G19610 42.308 8.09e-19 74.7
Smso7g00209 WGDA 1 78 Plant Defensins gene family AT1G19610 42.308 1.29e-17 72.4
Smso7g00210 WGDA 9 78 Plant Defensins gene family AT1G19610 45.07 1.58e-15 66.2
Smso7g00211 . 7 77 Plant Defensins gene family AT1G19610 39.241 6.59e-10 51.6
Smso7g00212 . 4 78 Plant Defensins gene family AT1G19610 44.737 1.97e-13 63.2
Smso6g01085 SST 1 77 Plant Defensins gene family AT2G02100 53.659 1.82e-24 85.9
Smso5g01993 ACH,WGDA 1 77 Plant Defensins gene family AT2G02120 68.354 1.64e-33 108.0
Smso4g00214 ACH,SST,WGDA 1 77 Plant Defensins gene family AT2G02100 60.256 6.19e-31 102.0