AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso29g00297 ATGACAAGGTTTTCAAGGGTAAAAAGCCGTGCCCGAGAAGAATTTTGGAGGAAGGACTTCAATTTTGGAGTCCTTGAACCCCTTTTCAGTACCCAATTAACCCTCGTTTTCGAATTAGGGGATAAGGGTATGTTGAGTACCGGCGGTGGAGGAACCTTTTTCTGGTTCCGAAACGACAAATCTTTATCGAAAGTCGAAGGAATCGTTGTGATTTTCAGCTGGGGTTCGCTTCAATTTAAGGATTACGTCAATCTTTATTCGTCTAGTGGCTGGAACTCTCTTGTTGTTGTTTCCGATTTGCTCAATCCATTTTTTCCAGAGAGAGCCACATCGCTTGCATTTTCTGTTCTCAATGAGCTTTTAGAGGAATTGAGGGCTAGCCCATGCCCTTTAGTCCTTGCAGCCTTCTCTGGTGGTTCACAAGCTTGTATGTATAAGGTTCTTCAGATCATTGAAAGGACATGTGAAGCACATCTTAATTTGGATGATAGTCGTTTAATCATGACATGCATCTCTGGTCAAATCTATGACTCTGGTCCGGTCAGTGTAACCAGTGATTTGGGTGCCCGGTTTGCCCTACATTCTTCCATCCTCAATGTACCCGGTTCATCAAAGTTGGTATCAATGGTTGCAAAAGGTGTCACATCTGGTCTCGATGCACTATTCCTTACTAGATTTGGATCCCACCGCTCTGAATATTGGCAAACGCTTTACTCATCTGTTGGTTTGGGCGCCCCATTTCTCATATTGTGTTCGGAAAATGACGATCTTGCCCCTTATCCCGTTATTTGCTCATTTGTTCAACAAGTACAAGGATTAGGAGGACATGTTCGACTTATTGGATGGAAGGACTCTCCTCACGTAGGTCACTACAAGCACAATCCCATCCAATACAGAGCAGCTGTAACTGAATTTCTTGACCACTCAGTTTCAATATTTAACCAGAAACTTCAAAAACTCGGTGAAAGGAACGGCATGGAGGGCATGCACGATAAAATATGTGAATTAATTTGTGACCTCCAAAATGCAGCAGTTGATTCAAACCAAAGCCTTAGACGAGTAGCAACAGGGCCAAACGACCACTTTTTCTTACCAAGTTCAGCCGAGTATCAAACAACCAAAGAATCGGGTTCATTACAAGATGAACAAAAAACAACGGTCCATTTAGGAAGCCCACCGGGCCTGAACCCACACAGTGTCCTTGGTCAAGTGCTGTTTGATGTATGTGTCCCTAAAAACATTGAAGGTTGGGATATTAAGTTTGAGAACCGAAAACCTTTTGCAGACGCAGGTAAACGGCCGTCAGCTCTAAAACGCATGAGACGATCAAGATTATGA 1338 43.35 MTRFSRVKSRAREEFWRKDFNFGVLEPLFSTQLTLVFELGDKGMLSTGGGGTFFWFRNDKSLSKVEGIVVIFSWGSLQFKDYVNLYSSSGWNSLVVVSDLLNPFFPERATSLAFSVLNELLEELRASPCPLVLAAFSGGSQACMYKVLQIIERTCEAHLNLDDSRLIMTCISGQIYDSGPVSVTSDLGARFALHSSILNVPGSSKLVSMVAKGVTSGLDALFLTRFGSHRSEYWQTLYSSVGLGAPFLILCSENDDLAPYPVICSFVQQVQGLGGHVRLIGWKDSPHVGHYKHNPIQYRAAVTEFLDHSVSIFNQKLQKLGERNGMEGMHDKICELICDLQNAAVDSNQSLRRVATGPNDHFFLPSSAEYQTTKESGSLQDEQKTTVHLGSPPGLNPHSVLGQVLFDVCVPKNIEGWDIKFENRKPFADAGKRPSALKRMRRSRL 445
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso29g00297 445 MobiDBLite consensus disorder prediction 373 393 - -
Smso29g00297 445 Gene3D alpha-beta hydrolase 75 320 IPR029058 -
Smso29g00297 445 MobiDBLite consensus disorder prediction 373 392 - -
Smso29g00297 445 SUPERFAMILY alpha-beta-Hydrolases 52 308 IPR029058 -
Smso29g00297 445 Pfam Eukaryotic protein of unknown function (DUF829) 171 417 IPR008547 -
Smso29g00297 445 PANTHER UNCHARACTERIZED 49 314 IPR008547 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso29g00297 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
431920 Smso26g02088 Smso29g00297
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr26:48109998 Smso29g00297 Smso-Chr29:4832685 dispersed
Smso Smso-Chr29:4832685 Smso8g01512 Smso-Chr8:28612711 dispersed
Smso Smso-Chr17:74955803 Smso29g00297 Smso-Chr29:4832685 wgd
Smso Smso-Chr26:48108133 Smso29g00297 Smso-Chr29:4832685 wgd
Smso Smso-Chr29:4832685 Smso7g00256 Smso-Chr7:4523661 wgd