AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso29g00311 ATGAAACAACTTTTTTCACCCCATTACCGTCAGCCACCACCACCTCGTCAAAACTCCGCCACTGCACCACCACCATTGTTAGATTTGAACTCCGCCATTGCCACTGTCACCGCCCCCTCGTCATCTGTTAGAGAGCACGTGAAAATCTCCCCTAACTCTACCAACACCATATTCGATTACTTTCATGATACAATGAATGACGATCTGTTATTCGGTAAAATCAAATCTGGATGCAATGTGTTCTTCGCTATCTTCTTCGCCACAGTTATTCTGTTCGCATATGCTTCAGCGCTCAAGGAAGGACAAACGTGCGTAGATAATAGCAATTGTGACTCAGGATTACATTGTGAGGCTTGTGTTGCAGACGGCAATGTTCGCCCTCGGTGTACTCGTCTTCAGCCTCTCAGTCCGTTTTCTAAGGTGAAAGGATTGCCGTTCAATCGGTACTCGTGGTTAACGACGCATAATTCGTTCGCTAAATTTGGAGAGAAGTCGGCTACCGGTTCCGTCGTTCTAGCTCCGACGAACCAGCAGGATTCTGTTAGTTCTCAGCTCGATAATGGTGTGAGAGGGCTGATGCTTGATATGTATGACTTTGAGAATGACATTTGGTTATGTCATTCCTTTGGTGGCAAATGCTTCAACTACACAGCTTTTCAACCTGCTATCAATGTTCTGAAAGAGATTCGAATTTTCCTAGAAAAGAATCCTACTGAAATCATAACCATAATCATTGAAGATTATGTTACCTCACCAAAGGGTCTAACTAACGTCTTCAATGCTGCTGGTCTGAGGAAATACTGGTTTCCAGCAGCCCAAATGCCAAGTGATGGTAGGGACTGGCCCACAGTTGACTCAATGGTCCGCCAAAATTACCGTTTGGTAGTTTTCACTTCCAAATCTTCTAAACAGGCTACCGAAGGGATTGCATATGAGTGGAAGTACTTAGTTGAAAACCAATATGGAACAGATGGGATGAAAAGTGGTTTATGCCCTAACCGTGCTGAATCAGCAGCAATGAACACTACATCAAGATCACTGGTTTTAATGAATTATTTCCCAGATACCCCTGATATTACCGAAGCTTGCAAGCACAATTCAGACCCATTAATAAGCATGGTGAACACATGCCATGATATAGCTGGTAAACGTTGGCCTAACTTCATTGCTGTTGACTTTTACAAGAGGAGTAATGGTGGGGGTGCACCAGCTGCTGTAGATATGGCTAATGGTCAGCTGGTTTGTGGTTGTAACACCATTGCAGCATGCAGGCCAAACATGACCTTTGGAGCCTGTAACTTCCCAGAGGCTGGGGCTGCTCCAACCCCAACTTCAGCAATAAAAAGCTCCGGGAACATCGGTGGTGGACCGGGTCAACTTGGATGGTTGTTTGGGTCAGGTTTGATTGCTATATACTTGTGTTTTTAA 1428 44.68 MKQLFSPHYRQPPPPRQNSATAPPPLLDLNSAIATVTAPSSSVREHVKISPNSTNTIFDYFHDTMNDDLLFGKIKSGCNVFFAIFFATVILFAYASALKEGQTCVDNSNCDSGLHCEACVADGNVRPRCTRLQPLSPFSKVKGLPFNRYSWLTTHNSFAKFGEKSATGSVVLAPTNQQDSVSSQLDNGVRGLMLDMYDFENDIWLCHSFGGKCFNYTAFQPAINVLKEIRIFLEKNPTEIITIIIEDYVTSPKGLTNVFNAAGLRKYWFPAAQMPSDGRDWPTVDSMVRQNYRLVVFTSKSSKQATEGIAYEWKYLVENQYGTDGMKSGLCPNRAESAAMNTTSRSLVLMNYFPDTPDITEACKHNSDPLISMVNTCHDIAGKRWPNFIAVDFYKRSNGGGAPAAVDMANGQLVCGCNTIAACRPNMTFGACNFPEAGAAPTPTSAIKSSGNIGGGPGQLGWLFGSGLIAIYLCF 475
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso29g00311 475 PANTHER UNCHARACTERIZED 108 423 IPR051057 GO:0008081(PANTHER)
Smso29g00311 475 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 145 253 - -
Smso29g00311 475 MobiDBLite consensus disorder prediction 1 23 - -
Smso29g00311 475 SUPERFAMILY PLC-like phosphodiesterases 143 414 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Smso29g00311 475 Gene3D Phosphatidylinositol (PI) phosphodiesterase 136 401 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso29g00311 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
143078 Smso10g03451 Smso29g00311
147018 Smso16g01504 Smso29g00311
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr22:58784736 Smso29g00311 Smso-Chr29:4991030 dispersed
Smso Smso-Chr25:49860268 Smso29g00311 Smso-Chr29:4991030 dispersed
Smso Smso-Chr29:4991030 Smso8g02856 Smso-Chr8:92980794 dispersed
Smso Smso-Chr10:89996109 Smso29g00311 Smso-Chr29:4991030 wgd
Smso Smso-Chr14:73173504 Smso29g00311 Smso-Chr29:4991030 wgd
Smso Smso-Chr16:75619063 Smso29g00311 Smso-Chr29:4991030 wgd
Smso Smso-Chr22:58762409 Smso29g00311 Smso-Chr29:4991030 wgd
Smso Smso-Chr29:4991030 Smso7g00273 Smso-Chr7:4742861 wgd