AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso29g00387 ATGACGGCCAACGGCATGAAGATGGCGGTAACTTCTCAGGCGTACCTGGAGGGATCTCAAGTCAAACAAACTAAATCACTCATCTCTGAGTTATGCCGTCTGTTTTACAACCTTGGTTGGGTCTCCGGCACCGGCGGAAGCATCACCGCGAAGGTCCACGATGAGTCCGTTCCCAAATCGGACCAACTCATCATCATGTCCCCCTCCGGTGTGCAAAAGGAGAGAATGGTAGAAGAAGATATGTATGTGTTATCTTCAATTGGCGATATTTTGTATTCTCCATTGCCGAAGCCTTACCCTCACAAGCCTCCAAAATGTTCAGATTGTGCCCCTCTTTTCATGAAGGCTTATCATATGCGTAATGCTGGTGCAGTTATTCATAGTCATGGAATGGAATCTTGTCTTGTGACAATGCTTGATCCGTTGGCAAAAGAGTTTAGGATCACTCATATGGAGATGATCAAAGGAATTCAAGGGCATGGCTATTATGATGAGCTTGTGGTCCCGGTAATAGAAAATACTGCTCATGAAAGAGAGTTGACTGAATCACTTGCTGCAGCAATTGAAGCGTACCCAAAAACAACTGCGGTACTGGTGCGAAACCATGGTATTTATGTATGGGGTGATTCCTGGATTAGTGCCAAAACTCAGGCTGAATGCTACCACTATCTCTTTGAAGCTGCAATCAAACTTCATCAGTTAGGCCTTGACTGGTCAACTCCGAGTCATGGTCCGCTTCAAAGTTCCAAACGATTTCTAGGTGGTCAAAGTACAAGCACATCTCAAAAGCGTTGCATTGTTCTTGACATTGAAGGGACAACTACACCAATATCATTTGTGACAGATGTTCTCTTCCCATATGCCAAGAAAAATGTTCAAAGGCATTTGGAAGAAACATATGATACTGATTTCACTCAAGATGATATTAAGTTGTTGCGATGTCAAGTAGAAGATGATTTACAACATGGGGTTGTAGATGCTGTTCCAATTCCGCCTGCTGAGGCTGGAAAACAGGCGGTGATAGCTGCCTTGGTTGCTAATCTTGAAGGAATGATAAAATCTGACAGGAAAATCACTTCATTAAAACAGTTACAAGGTCACATATGGAGCACTGGATTTGAGAAAAATGAACTTAAAGGAGTTGTGTTTGATGATGTACCTGGCTCTCTTGAAAAATGGCATGCTTCTGGGATAAAGGTGTACATTTATTCAAGTGGTAGCAGATTGGCACAGAGGCTGTTATTTGGATATACAGATTATGGGGATTTAAGGAATTACTTGTGTGGATTTTTTGACACCACAGTGGGGAATAAGAAAGAAACAAAAAGTTATGTTGAAATATCAGAATCACTTGGTGTTCATAAGCCATCAGATATCTTATTTGTGACTGATGTTTATCAAGAAGCAGTTGCTGCAAAGGCAGCTGGTTTGGAGGTTATGATATCAGTTCGGCCAGGAAATGGATCACTTCCTGAGAATCATGGTTTCAAGACTATCAAGTCTTTTTCGGAGATTTGA 1518 41.96 MTANGMKMAVTSQAYLEGSQVKQTKSLISELCRLFYNLGWVSGTGGSITAKVHDESVPKSDQLIIMSPSGVQKERMVEEDMYVLSSIGDILYSPLPKPYPHKPPKCSDCAPLFMKAYHMRNAGAVIHSHGMESCLVTMLDPLAKEFRITHMEMIKGIQGHGYYDELVVPVIENTAHERELTESLAAAIEAYPKTTAVLVRNHGIYVWGDSWISAKTQAECYHYLFEAAIKLHQLGLDWSTPSHGPLQSSKRFLGGQSTSTSQKRCIVLDIEGTTTPISFVTDVLFPYAKKNVQRHLEETYDTDFTQDDIKLLRCQVEDDLQHGVVDAVPIPPAEAGKQAVIAALVANLEGMIKSDRKITSLKQLQGHIWSTGFEKNELKGVVFDDVPGSLEKWHASGIKVYIYSSGSRLAQRLLFGYTDYGDLRNYLCGFFDTTVGNKKETKSYVEISESLGVHKPSDILFVTDVYQEAVAAKAAGLEVMISVRPGNGSLPENHGFKTIKSFSEI 505
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso29g00387 505 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 277 373 - -
Smso29g00387 505 Hamap Methylthioribulose-1-phosphate dehydratase [APIP]. 13 237 IPR027514 GO:0005737(InterPro)|GO:0019509(InterPro)|GO:0046872(InterPro)
Smso29g00387 505 NCBIfam methylthioribulose 1-phosphate dehydratase 28 234 IPR017714 GO:0005737(InterPro)|GO:0019509(InterPro)|GO:0046872(InterPro)
Smso29g00387 505 SUPERFAMILY HAD-like 260 505 IPR036412 -
Smso29g00387 505 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 373 505 - -
Smso29g00387 505 Pfam Class II Aldolase and Adducin N-terminal domain 28 228 IPR001303 -
Smso29g00387 505 CDD HAD-EP 265 486 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Smso29g00387 505 Hamap Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1. 13 505 IPR027505 -
Smso29g00387 505 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 264 504 - -
Smso29g00387 505 NCBIfam acireductone synthase 264 504 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Smso29g00387 505 Gene3D - 277 372 - -
Smso29g00387 505 SFLD enolase-phosphatase 264 504 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Smso29g00387 505 Pfam haloacid dehalogenase-like hydrolase 264 476 - -
Smso29g00387 505 PANTHER ENOLASE-PHOSPHATASE E1 259 505 - GO:0019509(PANTHER)|GO:0043874(PANTHER)
Smso29g00387 505 Gene3D - 20 245 IPR036409 -
Smso29g00387 505 Gene3D - 373 505 IPR023214 -
Smso29g00387 505 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 21 246 - -
Smso29g00387 505 SUPERFAMILY AraD-HMP-PK domain-like 22 243 IPR036409 -
Smso29g00387 505 SMART Aldolase-II-2 26 229 IPR001303 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso29g00387 K16054 methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1 [EC:4.2.1.109 3.1.3.77]
Smso29g00387 K09880 enolase-phosphatase E1 [EC:3.1.3.77]
Smso29g00387 K08964 methylthioribulose-1-phosphate dehydratase [EC:4.2.1.109]
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
148194 Smso18g01651 Smso29g00387
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr19:15665152 Smso29g00387 Smso-Chr29:5862824 dispersed
Smso Smso-Chr29:680321 Smso29g00387 Smso-Chr29:5862824 dispersed
Smso Smso-Chr29:5862824 Smso19g01097 Smso-Chr19:46230486 dispersed
Smso Smso-Chr17:14587586 Smso29g00387 Smso-Chr29:5862824 transposed
Smso Smso-Chr19:9914862 Smso29g00387 Smso-Chr29:5862824 transposed
Smso Smso-Chr18:74561775 Smso29g00387 Smso-Chr29:5862824 wgd
Smso Smso-Chr29:5862824 Smso7g00343 Smso-Chr7:5760533 wgd