Gene detail

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Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Smso29g00416	ATGAATCTACATTGCAATTGCACACCTCACCGGACGACTGATCCATCACCGTCAAACACAACATTCCGGTGCTGCAAGTTTGACTTACTTGAAACTGGAGTAACCTTTTGGGATGATTTTGAATTCAAAATGATGGAGTGCCTCAGGAACACTCTCGATAGACGCATACAGTTCTATGAGGATGAGATGCATAAGCTCAACGAACAACGTTTTATGCCCGCTTGGAGCTTTTTTAAAAATGCAGACGAACAAAGGGAATTCGGAGGGAAGGAGCATGGAGATGATCAATCTGCAATACTAAGCCGTAACAACAAACAACTGACACAGATTGTTCTAGATACTTCCTTCAGGGAGTTTGAGTTTCAACAATACCTATTTGCTTGTCAAGCTAAGTTGTTGTTTAATCTACACCGTCCATTTGATGTTGCATCAAGAGGGTTCTCTTTTGTAGTTAGTTTCTCAGAAGCATTGGCCCTGCATGAGAGTAATTTGCCCTTCTGTATGAGGGAAGTTTGGGTCCTAACCTCATGTTTGAACTTGCTCAATGCAACTGCTGACCATTATAGAGATGGACAAGTGGCACATGATATAGAAAGAGAATATTATCGTATACGTGGTGAATTATTTACTCTATCCCGAGTTAAGAAAAAGAATCTGGAGCTGTCAAAGGGTGCTGCTGACAGTTATTATCATGCATGGTGGAAAAGACATGGGGTTGTTTTTGATGGTGAAATTGCATCTGTTTATTTTAAACACAAGAACTATGATCAAGCTGCAAATTCATATGAAAAAGTTTGTGCTCTTTATACTAGTGAAGGATGGCAAGATTTGTTAGCAGATGTGCTTCCTAATTTAGCCGAATGCCAGAAAATACTTGATGATAAGCCCGGTTACTTATCATCATGTGTTAGATTACTTTCTTTAGAGAAAAACTTGTTCTTGACCAAAGAACGCCAAGCGTTTCAGTCAGAACTAGTTCGTCTTGCGCACAGTGAAATGGATGATCCGGTCCCTTTAGATGTGTCATCACTGATAACATATTCGGGTCATTCGGGCCCACCCGTGGAGCTTTGTGATGGGGATCCGGGCAGTTTGTCTGTAACTTTATGGAGTGAATTTCCTGATGATATCACTCTTGAATCACTTAGTCTTACCTTGACAGCTACAAATAACGCCGATGAACGTGTTAAGGCAATCAAGAGCAGTGATGTTACTATATTGAACACGGGTCGAAACACAATTGCTCTTTTGTTGCCCCCACAGAAACCGGGCTCCTATGTGTTAGGTGTTCTTACAGGGCAGATTGGTCATTTAAGATTCAGGTCTCATGGTTTCTCCAGAGGTGGGCCAGCAGATAGTGATGATATGAGTTTTGATAAGCCCACTAGGCCTATATTGAAGGGTGCTCGTCTGCACATTGACGTGGGGCCCGGGTTAAAGATCGAGGAGTCACGCGCCATTGAAATCGAGAAATATGTCAATAATGATGATAATAATAATAATAATAATTCTAATGCTTCTGATACTCCCACAGAATCTTCTCAACTTAATTTTACAAATGGTAGTATAGAGTTACCAGATTGGGCCAGCAGTATAATTACCATTTTATGGATTCCTGTGTGTGCCATTAGTGATGGGCTACCAAGAGGAACATCTGCAGGGGTAATATCGACCCCGAGACCAAGCATTGCTAATGGGCTGAGGACTTTAGCTCTAAAACTTGAATTTGGGGTGTCACATAATCAGATATTGAAAAGGACTATACCTGTTCATTTCACTGACCCGTTCCACATCAGCACACGGGTCACAGATCAGGGCAGTGATGGTTCTTTGTTTTTGCAAGTGATATTACAGTCACAGGTGAAGGCCTCATTAACTATACATGATGTTTGGTTAGATTTACAGGATGGGTTTTCGCATGCTGGACGAGGTGACGGGAGACCGACATCTGGCATGTTCCCATTGGTTGTTCCTCCATCATCTAAATCCGGAATTTTGTTTGGTATATCACTTGGAACTACAACCACTGAAGATGAAGAGATAGTGGTGCATCATGATACAATAATAAATATAAAATATGAAATTTGTGGGGATAGAAATCTTGGGTCTCATACCCCTATCTCTCTAAAAACCGAAGGACCCGAACACGATGACGTCACACCGTTTTTAACATTCAAGAGCGGTCTCGTTTTACAACGGCCAGTGCAGGAACCTTTGTTAGCAGTTGCTTTTCTTCCTTTACCTTCAAACGGTCTTACAGTTGGTCAACTTATCACATTCAAATGGAGACTTGAAAGATTGACCAGTTTTGACCTCGAGAACGAATTATTGTATGAAGTCAACGCGAATTCAAAGAATTGGATGATCGCCGGAAGGAAACGAGGACATGCCCCTCTCTCCTCAAAACAAGGGGCAAGAATTGAGATATCAATAATGTGTGTGCCACTAGCAGCTGGGCATGTACGACCTCCACAACTCCACTTGCCAAATGTCAATCGGGCCAATATATGTTGCAATCCTGCGGGCCCACATTTAGTGTGTGTTCTACCACCACCTTTGAGCTCATCATTTTGCATTCCAGCATGA	2586	41.96	MNLHCNCTPHRTTDPSPSNTTFRCCKFDLLETGVTFWDDFEFKMMECLRNTLDRRIQFYEDEMHKLNEQRFMPAWSFFKNADEQREFGGKEHGDDQSAILSRNNKQLTQIVLDTSFREFEFQQYLFACQAKLLFNLHRPFDVASRGFSFVVSFSEALALHESNLPFCMREVWVLTSCLNLLNATADHYRDGQVAHDIEREYYRIRGELFTLSRVKKKNLELSKGAADSYYHAWWKRHGVVFDGEIASVYFKHKNYDQAANSYEKVCALYTSEGWQDLLADVLPNLAECQKILDDKPGYLSSCVRLLSLEKNLFLTKERQAFQSELVRLAHSEMDDPVPLDVSSLITYSGHSGPPVELCDGDPGSLSVTLWSEFPDDITLESLSLTLTATNNADERVKAIKSSDVTILNTGRNTIALLLPPQKPGSYVLGVLTGQIGHLRFRSHGFSRGGPADSDDMSFDKPTRPILKGARLHIDVGPGLKIEESRAIEIEKYVNNDDNNNNNNSNASDTPTESSQLNFTNGSIELPDWASSIITILWIPVCAISDGLPRGTSAGVISTPRPSIANGLRTLALKLEFGVSHNQILKRTIPVHFTDPFHISTRVTDQGSDGSLFLQVILQSQVKASLTIHDVWLDLQDGFSHAGRGDGRPTSGMFPLVVPPSSKSGILFGISLGTTTTEDEEIVVHHDTIINIKYEICGDRNLGSHTPISLKTEGPEHDDVTPFLTFKSGLVLQRPVQEPLLAVAFLPLPSNGLTVGQLITFKWRLERLTSFDLENELLYEVNANSKNWMIAGRKRGHAPLSSKQGARIEISIMCVPLAAGHVRPPQLHLPNVNRANICCNPAGPHLVCVLPPPLSSSFCIPA	861

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Smso29g00416	861	MobiDBLite	consensus disorder prediction	493	515	-	-
	Smso29g00416	861	Pfam	Trafficking protein particle complex subunit 10, TRAPPC10	771	829	IPR022233	-
	Smso29g00416	861	Pfam	Foie gras liver health family 1	242	307	IPR021773	-
	Smso29g00416	861	PANTHER	EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1-TMEM1	22	78	IPR045126	GO:0006891(PANTHER)\|GO:0034498(PANTHER)\|GO:0048193(InterPro)\|GO:1990071(InterPro)\|GO:1990071(PANTHER)
	Smso29g00416	861	Coils	Coil	49	69	-	-
	Smso29g00416	861	MobiDBLite	consensus disorder prediction	492	515	-	-
	Smso29g00416	861	SUPERFAMILY	TPR-like	244	294	IPR011990	GO:0005515(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Smso29g00416	K20307	trafficking protein particle complex subunit 10

Event-related genes

Select	Gene_1	Gene_2	Event_name
	148206	Smso18g01692	Smso29g00416

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Smso	Smso-Chr23:6514210	Smso29g00416	Smso-Chr29:6209882	transposed
	Smso	Smso-Chr27:33951708	Smso29g00416	Smso-Chr29:6209882	transposed
	Smso	Smso-Chr18:74991733	Smso29g00416	Smso-Chr29:6209882	wgd
	Smso	Smso-Chr29:6209882	Smso7g00370	Smso-Chr7:6072068	wgd