AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso29g00439 ATGCAACCCCAGCAAACCCTACCGCCGGAATCTGACCTACCGTCTCTCGCCGCCATCAAAATCAAATCATCATCCCCTCGTTTCCGTCCTACAGCCAATCCTTCCGCCACCGAAACCCCCACCGCCGGCGCCCAACGCAGGATAGGCATCGCCGTTGATCTCAGCGACGAGAGTGCCTTCGCCGTTAAGTGGGCCGTCAATCAGTATCTCCGCCCCGGCGACGCCGTGATCCTCATCCACGTCCGTCCTACTTCCGTCCTCTACGGCGCTGACTGGGGCTCCGTTGACCTTTCAATCGTTGACACTGACAACGAAGAATCGAAGCTTAAACTCGAAGACGAGTTTGATACTTTCACAACTACGAAATCCGCTGATCTAGCACAGCCTCTGGTGGACGCGCACATACCGTATAAGATCCATATTGTTAAAGATCATGACATGAAGGAGAGGCTTTGTTTGGAGGTGGAGAGGCTAGGGTTAAGTGCTGTTATTATGGGGAGCCGAGGGTTTGGTGCGACGAAACGCGGGAGCGATGGGCGGCTTGGGAGTGTTAGTGATTACTGTGTGCGCCACTGTGTGTGTCCGGTGGTGGTTGTGAGGTATCCTGATGAGAAGGATGCTGCTGCGTCTGCTGAGCCTATTGTTTCGGTTGCTACGGCTGATGATGAAGAAGACGAGCCTGAATATCATGATGCGACTGATGAGCGAAAATGTTAG 717 53.84 MQPQQTLPPESDLPSLAAIKIKSSSPRFRPTANPSATETPTAGAQRRIGIAVDLSDESAFAVKWAVNQYLRPGDAVILIHVRPTSVLYGADWGSVDLSIVDTDNEESKLKLEDEFDTFTTTKSADLAQPLVDAHIPYKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGATKRGSDGRLGSVSDYCVRHCVCPVVVVRYPDEKDAAASAEPIVSVATADDEEDEPEYHDATDERKC 238
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso29g00439 238 Pfam Universal stress protein family 46 200 IPR006016 -
Smso29g00439 238 MobiDBLite consensus disorder prediction 212 238 - -
Smso29g00439 238 MobiDBLite consensus disorder prediction 23 44 - -
Smso29g00439 238 CDD USP-Like 47 199 - -
Smso29g00439 238 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 46 203 - -
Smso29g00439 238 PRINTS Universal stress protein signature 45 63 IPR006015 -
Smso29g00439 238 PRINTS Universal stress protein signature 178 200 IPR006015 -
Smso29g00439 238 PANTHER OS01G0783500 PROTEIN 9 237 IPR044162 -
Smso29g00439 238 MobiDBLite consensus disorder prediction 26 42 - -
Smso29g00439 238 Gene3D HUPs 35 212 IPR014729 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso29g00439 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr19:70133286 Smso29g00439 Smso-Chr29:6525069 dispersed
Smso Smso-Chr29:6525069 Smso2g00889 Smso-Chr2:13526065 dispersed
Smso Smso-Chr29:6525069 Smso7g00392 Smso-Chr7:6443862 wgd