AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso29g00605 ATGGCAACCCCTTCTTCATCATCCACCTTCATCTGCAAAACCGTAATCGTCGTCTTACTCCTCACTTGTACCCTCGGTCCAAACGTACAAGCCTTTAAAGCACCAATTCGTCCACAAGACATACTCCCGCTTCTCCCCCGGCAAGTTTCATGGCCTATTCTCAACTCCCTTCGAGGCGCCGCCGATCTTCTTCCGAGCTTCGTCGGAGCCGCCGCGATTGCGAATAATTCCGATTTGCACTGGAAGGGGTCTTGCTTTTATGAGAACACTGCGTGGTTAGAGCTTCATAATAAATCCGGTAGTGAATTTGGTGGAGGCACTCTTCATATCAAGGTAAGCAATGCACACAGTTGGACATGTATGGATATTTATGTCTTTGCGACTCCGTATCGTGTGACGTGGGACTATTATTTTCTGTCTCGTGAGCATACACTCGAGTTTGATGAGTGGAGTGGGAAGGCTGAATATGAATATGTAAAACATAAAGGAATTGCAATTTTCCTCATGGAAGCAGGAATGATAGGAACCCTAGAAGCATTATGGGAGGTCTTCCCTTTATTCACAAATACAGGTTGGGGAGAGAGTTCTAATATTGCTTTTCTCAAGAGACATATGGGAGCTAATTTTGAGGTGCGGCCCGGACCATGGGTAACAAACATAACCCAAGATGATATTCATTCTGGGGATTTCCTTGCAATATCAAAAATCCGTGGTAGATGGGGCGGGTTTGAAACCCTTGAAAAATGGGTATCGGGGGCATATGCGGGTCATTCTGCTGTTTGCTTGAGGGACGCAGAAGGAAAACTATGGGTTGGTGAATCCGGACATGAAGATGAAGAGGGTCAAGATGTTATTGCTTTGTTGCCATGGGATGAGTGGTGGAATTTTGAGCTGACTGAAGATGATGCTAATCCACATATTGCTTTGCTTCCTTTGCATCCTGATCTACGGTCTAGATTTAATGAAACTGCTGCTTGGGAGTATGCACAAAGTATGGTCGGGTTACCTTATGGTTACCATAATTTGATATTTAGTTGGATAGATACTGTCAGTGATAATTATCCACCACCTTTGGATGCTAATCTGGTTGCATCTGTTATGACTGTGTGGGATCAAATGCAGCCTGCATATGCGGCTAATATGTGGAATGAAGCCTTGAATAAACGGCTTGGTACTCAGGGGCTTGAACTTGCTGATATTTTAGTGGAAGTTGAAAGACGCGGATCATCTTTTGCTGAATTACTAACTATACCTGAACAAGATGATTGGGTATATGCTGATGGAAAGTCAACTTCTTGTGTTGCTTTTGTCCTTGAAATGTATAAAGAAGCAGGACTCTTTGGAGATCTTGCAGACCAAATTCAAGTTACCGAGTTTACAATAAAGGATGCTTACACACTCAACTTTTATGAAAACAATTCGAGCCGCCTGCCAAAGTGGTGTAATGAAGGCGACACAGTTGACCTTCCATTTTGTCAAATTAAAGGAAAATATCGAATGGAGTTACCTGGATACAATACCATTGAGCCATACCCGCAAATGACTGAAAATTGCCCGTCATTACCACCAGATTATGCAAGACCTCAGTACTGCTGA 1596 43.42 MATPSSSSTFICKTVIVVLLLTCTLGPNVQAFKAPIRPQDILPLLPRQVSWPILNSLRGAADLLPSFVGAAAIANNSDLHWKGSCFYENTAWLELHNKSGSEFGGGTLHIKVSNAHSWTCMDIYVFATPYRVTWDYYFLSREHTLEFDEWSGKAEYEYVKHKGIAIFLMEAGMIGTLEALWEVFPLFTNTGWGESSNIAFLKRHMGANFEVRPGPWVTNITQDDIHSGDFLAISKIRGRWGGFETLEKWVSGAYAGHSAVCLRDAEGKLWVGESGHEDEEGQDVIALLPWDEWWNFELTEDDANPHIALLPLHPDLRSRFNETAAWEYAQSMVGLPYGYHNLIFSWIDTVSDNYPPPLDANLVASVMTVWDQMQPAYAANMWNEALNKRLGTQGLELADILVEVERRGSSFAELLTIPEQDDWVYADGKSTSCVAFVLEMYKEAGLFGDLADQIQVTEFTIKDAYTLNFYENNSSRLPKWCNEGDTVDLPFCQIKGKYRMELPGYNTIEPYPQMTENCPSLPPDYARPQYC 531
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso29g00605 531 PANTHER OS01G0793500 PROTEIN 7 531 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso29g00605 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
337129 Smso29g00605 Smso7g00457
353830 Smso7g00457 Smso29g00605
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4950277 Smso Smso12g03061 Smso-Chr12:78671510 Smso29g00605 Smso-Chr29:8741970
4953264 Smso Smso14g01195 Smso-Chr14:57459517 Smso29g00605 Smso-Chr29:8741970
4964176 Smso Smso19g00908 Smso-Chr19:26479100 Smso29g00605 Smso-Chr29:8741970
4971292 Smso Smso21g01277 Smso-Chr21:13391929 Smso29g00605 Smso-Chr29:8741970
4975905 Smso Smso23g01492 Smso-Chr23:65904249 Smso29g00605 Smso-Chr29:8741970
4986369 Smso Smso29g00605 Smso-Chr29:8741970 Smso2g02761 Smso-Chr2:115060332
5011710 Smso Smso16g00700 Smso-Chr16:35771286 Smso29g00605 Smso-Chr29:8741970
5096976 Smso Smso29g00605 Smso-Chr29:8741970 Smso7g00457 Smso-Chr7:7736894