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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso29g00606 ATGCATGATTTTTGCTTTACAATCCCGTATGGGATGATAGTGTTCTGCGGTGGGTTAATTGGGTTTGCAAGAAAAGGGAGCACGACCTCGTTGGCTGGTGGTGTGGGCACTGGATTATTGCTCTTCCTCGCTTCGTATCTCACTCTCAGCGCCTTCCACAAGCGAAAGAATTCATGGTTGGGATTGATTCTTGAAACTGTTTGTGCTGCTGCACTCACATGGGTTATGGGACAGCGATACACGGAGACTGGTAAAATAATGCCTGCAGGTCTTGTTGCTGGTATCAGTGGAGTGATGACAGCATTTTATCTGTACAAGATAGCCACTGGTGGTAACCATTTTCCCGCAAAAACTGAATGA 360 46.39 MHDFCFTIPYGMIVFCGGLIGFARKGSTTSLAGGVGTGLLLFLASYLTLSAFHKRKNSWLGLILETVCAAALTWVMGQRYTETGKIMPAGLVAGISGVMTAFYLYKIATGGNHFPAKTE 119
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso29g00606 119 Gene3D - 1 111 IPR044890 -
Smso29g00606 119 PANTHER TRANSMEMBRANE PROTEIN 14, 15 1 108 IPR005349 GO:0009706(PANTHER)|GO:0015245(PANTHER)|GO:0015908(PANTHER)|GO:0016020(InterPro)
Smso29g00606 119 Pfam Transmembrane proteins 14C 6 103 IPR005349 GO:0016020(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso29g00606 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
337130 Smso29g00606 Smso7g00458
353831 Smso7g00458 Smso29g00606
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4959083 Smso Smso17g00845 Smso-Chr17:9073860 Smso29g00606 Smso-Chr29:8747048
4986370 Smso Smso29g00606 Smso-Chr29:8747048 Smso8g00912 Smso-Chr8:15052616
5096977 Smso Smso29g00606 Smso-Chr29:8747048 Smso7g00458 Smso-Chr7:7742220