AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso29g00615 ATGCCTTATCCCATCATCCTTAAACCCTCAATCCCTAACGCCGCCGTATCACATTTCCAGACGCCGTGGGGTCAACACCTCCATAAATCCGTAGCTTCACTCTTCTTTAAATCGTATCGCAGATGGATGAGGGCTCAAATCACTCGTAATTTAAGCTTAGCGTTGGATTATCGCAGAGCCGTCGATTGTTCGTTTTCATCACTTCGGTTTCTTCCGGCATCGGCGGACTACTCTCTCTTTAAATTTGGTAGGAAGAATCATCTATTAGGCCGGTTTAATCAATCGACTGTTGCTTCGGTGCGAGATTCGTCCTGCGTGAAGACTATGGGTTCGCAATCGGCGGCGGAGGTGGAGTGGCCGGCGAACAAAGTTAGGGATTCGTTTATAAAGTTCTTCGAAGAAAGGAATCACGTTTATTGGAAATCAAGTCCGGTTGTTCCAGTCAACGATCCCACACTTCTATTTGCCAATGCTGGAATGAATCAGTTCAAGCCTATATTCTTGGGTACTGTTGATCCTAACACTTCCTTAAGCAAACTGACTCGTGCCTGCAACACACAGAAATGCATCCGAGCTGGCGGGAAGCATAATGATCTTGATGATGTTGGCAAAGACACTTATCATCATACCTTTTTTGAAATGCTCGGTAATTGGTCATTTGGTGATTATTTTAAAGAGGAAGCCATTGGTTGGGCTTGGGAACTTCTCACAGTGGTGTATAAGCTACCTACCGATCGGATATATGCTACTTATTTTGGCGGTGATGAGAAATTGGGCCTTCCGGCTGATAATGAAGCTAGAGATATATGGCTCAAATATTTGCCACCTGCACGAGTTTTGCCCTTTGGTTGTAAAGACAATTTCTGGGAGATGGGTGACACTGGACCTTGTGGACCCTGTACTGAAATACACTTCGATAGAATTGGTGGTCGTGATGCTGCTGACTTAGTTAATAATGATGACCCTACATTGATCGAAATATGGAATAATGTGTTCATTCAGTTTAACAGGGAAGCTGATGGTTCCTTAAAACCTTTGCCCGCCAAACATGTGGATACTGGAATGGGTTTCGAAAGATTGACTTCAATTCTTCAGAACAAAATGAGCAACTATGACACTGATGTTTTTTTACCCATTTTTGATGCTATCCAAGAGGCAACTGGTGCTAGACCATATTCAGGCAAAGTGGGCCCAGATGATGTGGATGGAATGGACATGGCATACAGAGTTGTTGCTGACCACATCAGAACTCTTTCATTTGCCATTGCAGATGGTTCTTGTCCAGGAAATGAAGGGCGTGAGTATGTTTTGAGGCGCATTCTTCGCCGAGCTGTACGTTATGGAACAGAAGTACTGAAAGCGAAACAAGGATTTTTCAATGGATTGGTAAAAGTTGTGGTGGATGTAATGGGCCATGTTTTTCCTGAGCTCAAACAACAAGAGGCACACATTAGAGAGATTATAGCTGAAGAGGAAGCAAGTTTTGGGAGGACTTTACTTCATGGAATTGAGAAGTTTAAGAAGACGGCTCAAGATGTTCAGGGAAAGATATTTAGTGGACAGGATGCATTTGTTTTGTGGGATACTTTTGGATTCCCATTGGATTTGACTCAGTTGATGGCTGAAGAAAGAGGGTTGGTGGTTGATGTTGAGGGCTTTAATATTGCTATGAATGAAGCTAGAGAAAGATCAAGAAACGCCCAGAATAAGCAAGCTGCTGTTACAATTGTCATGGACGCAGATGCCACCTCCGCACTGCATAAGAGAGGGGTATCTACAACAGATGACAGTTTCAAGTTTACATGGTTTAAGGACCACAAAAGTGTGATAAAAGCCATTTACACAGGTTCTGAGTATGTGGAACGTGCTGATGCTGGTGATGATGTTGGCATAATTCTTGAGAGCACAAGTTTTTATGCTGAGCAAGGTGGTCAGATATTTGATACTGGACTACTTGGAGGCCCATCTGGATCATTTGAAGTGTCCAACGTTCAAATTTATGGTGGTTTTGTGCTTCATCTTGGTAAAATTAGTGGGGGGTTGGCCCGATTCCATGTGGGTGATGAAGTAATTTGTAAGGTGGATTATGAAAGGCGTCAACAAATTGCTCCTAATCATACATGTACACACATGTTAAATTTTGCTCTCAGGGAAGTACTTGGGACTCATGTTGATCAAAAAGGATCTATTGTTCTTCCAGAAAAATTAAGGTTTGACTTTTCCCATGGGAAGCCTGTAAAGCCCGATGACCTTCGTAGAATTGAATCAATTGTGAATGAACAAATTAAAGCCGAGTTGGAGGTTTCTGCAAAGGAGGCAAGCCTTGCTGATGCAAAAAGAGTAAACGGTTTGCGGGCTGTTTTTGGTGAAGTGTACCCTGATCCAGTTAGGATTGTTGCCATTGGTCGACAAGTCGTTGAGTTATTGGCTGATCCTGAAAATGAACAATGGCTGTCCATATCTGCAGAACTCTGTGGCGGGACCCATATTTCAAATACACGCGAGGCAAAAGCATTTGCTCTTTTGTCCGAGGAGGGAATTGCCAAGGGGATTAGGAGAGTTACTGCTGTAACAACAGACTATGCTTTTGAAGCTATTAAAAAGGCATCTGAGCTTGAGCTGGAAGTTGATCTGGCATCTAAGCTTGAAGGAAGCCTTCTTGAACAGAAAGTGACTTCTTTAAATGGTCAAGTAGAGTCTGCCTCAATTCCATCAGCAAAGAAGGCTGATCTTAAGGCAAAAATCTCCATCCTTCAGAATCAAGTAATAAAAGCAAAAAAGAAGACTGCTGAAGAGAACATACGAAAAGCTGTTGAAGCTGCCACCGAGGCAGCAGAAGTTGCATCTTCCGAGGGGAAAGCCTTCTGCATTTCACATGTTGGTGTAGGGTCAGATACTGCTGCTATTCGTGAAGCAGTTGTCAAAGTCATGGAGCAGAAGGGAATGGCGGTGATGGTTTTTAGCACCGATGAACAATCAAAGAAGGCGTTAGTTTGTGCGGGTGTACCGGAAAAAAGCGATAAAAGCAACAATCTGAAGGTTTTAGATTGGCTGAAGGCAGCACTGAAGCCGCTGGAAGGCAAAGGTGGTGGAGGGAAAGGTGGTCTTGCTCAAGGCCAGGGACCAGATATAAAACACGTGGATGAAGCAATAGACGTTGCCAAGTCATTCGCGGCTCTCAAACTGGGCTGA 3192 43.61 MPYPIILKPSIPNAAVSHFQTPWGQHLHKSVASLFFKSYRRWMRAQITRNLSLALDYRRAVDCSFSSLRFLPASADYSLFKFGRKNHLLGRFNQSTVASVRDSSCVKTMGSQSAAEVEWPANKVRDSFIKFFEERNHVYWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTVDPNTSLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGWAWELLTVVYKLPTDRIYATYFGGDEKLGLPADNEARDIWLKYLPPARVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGGRDAADLVNNDDPTLIEIWNNVFIQFNREADGSLKPLPAKHVDTGMGFERLTSILQNKMSNYDTDVFLPIFDAIQEATGARPYSGKVGPDDVDGMDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGTEVLKAKQGFFNGLVKVVVDVMGHVFPELKQQEAHIREIIAEEEASFGRTLLHGIEKFKKTAQDVQGKIFSGQDAFVLWDTFGFPLDLTQLMAEERGLVVDVEGFNIAMNEARERSRNAQNKQAAVTIVMDADATSALHKRGVSTTDDSFKFTWFKDHKSVIKAIYTGSEYVERADAGDDVGIILESTSFYAEQGGQIFDTGLLGGPSGSFEVSNVQIYGGFVLHLGKISGGLARFHVGDEVICKVDYERRQQIAPNHTCTHMLNFALREVLGTHVDQKGSIVLPEKLRFDFSHGKPVKPDDLRRIESIVNEQIKAELEVSAKEASLADAKRVNGLRAVFGEVYPDPVRIVAIGRQVVELLADPENEQWLSISAELCGGTHISNTREAKAFALLSEEGIAKGIRRVTAVTTDYAFEAIKKASELELEVDLASKLEGSLLEQKVTSLNGQVESASIPSAKKADLKAKISILQNQVIKAKKKTAEENIRKAVEAATEAAEVASSEGKAFCISHVGVGSDTAAIREAVVKVMEQKGMAVMVFSTDEQSKKALVCAGVPEKSDKSNNLKVLDWLKAALKPLEGKGGGGKGGLAQGQGPDIKHVDEAIDVAKSFAALKLG 1063
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso29g00615 1063 FunFam Alanine--tRNA ligase 593 693 - -
Smso29g00615 1063 Gene3D - 591 694 - -
Smso29g00615 1063 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 372 572 IPR018162 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006419(InterPro)
Smso29g00615 1063 CDD AlaRS-core 121 367 - -
Smso29g00615 1063 FunFam Alanine--tRNA ligase, cytoplasmic 118 368 - -
Smso29g00615 1063 Gene3D - 695 871 - -
Smso29g00615 1063 FunFam Alanine--tRNA ligase, cytoplasmic 695 870 - -
Smso29g00615 1063 NCBIfam alanine--tRNA ligase 123 1041 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Smso29g00615 1063 Coils Coil 908 940 - -
Smso29g00615 1063 PRINTS Alanyl-tRNA synthetase signature 433 446 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Smso29g00615 1063 PRINTS Alanyl-tRNA synthetase signature 352 365 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Smso29g00615 1063 PRINTS Alanyl-tRNA synthetase signature 409 425 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Smso29g00615 1063 PRINTS Alanyl-tRNA synthetase signature 325 336 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Smso29g00615 1063 PRINTS Alanyl-tRNA synthetase signature 197 208 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Smso29g00615 1063 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 796 854 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Smso29g00615 1063 SUPERFAMILY Class II aaRS and biotin synthetases 120 371 IPR045864 -
Smso29g00615 1063 PANTHER ALANYL-TRNA SYNTHETASE 116 1059 IPR050058 GO:0002161(PANTHER)|GO:0004813(PANTHER)|GO:0005739(PANTHER)|GO:0006419(PANTHER)|GO:0009507(PANTHER)
Smso29g00615 1063 SUPERFAMILY Translation proteins 625 694 IPR009000 -
Smso29g00615 1063 Pfam DHHA1 domain 911 1057 IPR003156 GO:0003676(InterPro)
Smso29g00615 1063 FunFam Alanine--tRNA ligase 950 1058 - -
Smso29g00615 1063 Hamap Alanine--tRNA ligase [alaS]. 119 1062 IPR023033 GO:0004813(InterPro)
Smso29g00615 1063 Gene3D - 949 1058 - -
Smso29g00615 1063 SUPERFAMILY ThrRS-AlaRS common domain 694 865 IPR018163 GO:0000166(InterPro)
Smso29g00615 1063 Gene3D Bira Bifunctional Protein; Domain 2 120 368 IPR045864 -
Smso29g00615 1063 Pfam tRNA synthetases class II (A) 123 698 IPR018164 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Smso29g00615 1063 Coils Coil 550 570 - -
Smso29g00615 1063 SMART tRNA-SAD-4 796 855 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Smso29g00615 1063 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 119 868 IPR018165 GO:0003676(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso29g00615 K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
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Event-related genes

Select Gene_1 Gene_2 Event_name
337135 Smso29g00615 Smso7g00463
353836 Smso7g00463 Smso29g00615
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4943774 Smso Smso10g02016 Smso-Chr10:60455371 Smso29g00615 Smso-Chr29:8808766
4957189 Smso Smso16g00807 Smso-Chr16:48386317 Smso29g00615 Smso-Chr29:8808766
4962843 Smso Smso18g01998 Smso-Chr18:78523329 Smso29g00615 Smso-Chr29:8808766
4986376 Smso Smso29g00615 Smso-Chr29:8808766 Smso10g02017 Smso-Chr10:60457855
5017993 Smso Smso2g02654 Smso-Chr2:109892896 Smso29g00615 Smso-Chr29:8808766
5021834 Smso Smso1g03089 Smso-Chr1:110369343 Smso29g00615 Smso-Chr29:8808766
5096982 Smso Smso29g00615 Smso-Chr29:8808766 Smso7g00463 Smso-Chr7:7803104