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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso29g00631 ATGAATATTGAAATCTATGGGAGGCATGCGCTTCTCTTCGACGATGACTCCTCCGCAGCCTTTGTAAACTCCGACGACGCACTTGTTGAATGGAATTCTCTGTTAATCGACCGTTACGACGTCCGGCATCTCCTTTCCAGCCCTCCGTCTTCTCGGAGGCGGCGCAATCCACAAACAACGCACTCATCTTCCGCCGATGTGGACCTGGATTATGAACGATACCTGGATCTCCCCCCACCGTCCGAGGAAGAAGAAGAAGATGCAAAACCAGAACCTGTAGGTGGATTTAATGCTGTTCCTTTTTCTTATGGAAATGATGGGGATTCTAATAATCAAACGACTGCTGAGACCGAACAAGAAGTCCCTAAATTTCATCCCCCCTTCCCTGTACCTGACAGCCTTGTTCAAAACTTGATGCTTGGAGCAGGGATCGAGTTGTGA 441 48.75 MNIEIYGRHALLFDDDSSAAFVNSDDALVEWNSLLIDRYDVRHLLSSPPSSRRRRNPQTTHSSSADVDLDYERYLDLPPPSEEEEEDAKPEPVGGFNAVPFSYGNDGDSNNQTTAETEQEVPKFHPPFPVPDSLVQNLMLGAGIEL 146
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso29g00631 146 SMART DRY-EERY-2 1 107 IPR019147 -
Smso29g00631 146 MobiDBLite consensus disorder prediction 50 65 - -
Smso29g00631 146 MobiDBLite consensus disorder prediction 45 131 - -
Smso29g00631 146 PANTHER SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT 3 138 IPR040397 GO:0000395(PANTHER)
Smso29g00631 146 MobiDBLite consensus disorder prediction 103 119 - -
Smso29g00631 146 Pfam Alternative splicing regulator 3 87 IPR019147 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso29g00631 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
337143 Smso29g00631 Smso7g00482
353844 Smso7g00482 Smso29g00631
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr29:8969032 Smso7g00482 Smso-Chr7:8100395 transposed