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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso29g00656 ATGAAGTGTAATTTACTTATTTTGAGAGGTCCTGGTCTACTTCCTTTAGGTCTTTCTTTCCCTCCAAGCCAACAAGGAATCGCTTACTCCCTTCATAAATCGTCGTCTCCACTGAACATTCATAGCCATTTCTTCACATCTAGCAGCTTGATTTCCTCCAGATCCAAAGTTTTCTGTCACATTTGCTTAGCCGTAATTTCCGATTCCTTTCGATCCTGCGCAGATTTTCTATACGATATGGGTGACAGTCAGTACTCGTTCTCTCTTACTACTTTCAGTCCTTCTGGAAAGCTTGTTCAGATTGAACATGCCCTCACAGCTGTTGGCTCTGGTCAAACTTCATTGGGGATAAAAGCTTCTAATGGGGTCGTAATTGCAACCGAAAAGAAGCTTCCATCCATTTTGGTTGATGAGACATCAGTGCAAAAGATTCAGATTTTGACTCCTAATATTGGAGTTGTTTATAGTGGGATGGGGCCTGATTCTCGAGTTCTGGTCAGAAAGAGTAGGAAGCAGGCCGAGCAGTACCAACTACTATACAAAGAACCAATCCCTGTTACACAACTTGTAAGGGAAACTGCTGCTGTTATGCAGGAATTTACTCAATCAGGTGGTGTAAGGCCTTTTGGTGTTTCACTTCTTGTTGTTGGTTATGATGACAAAGGTCCCCAACTATATCAGGTGGATCCATCAGGTTCATATTTCTCCTGGAAAGCTTCGGCCATGGGAAAGAATGTATCTAATGCGAAGACATTTCTTGAAAAGAGGTACACTGATGATATGGAGCTTGAGGATGCGATACACACAGCTATTTTAACATTGAAGGAGGGATTTGAAGGACAAATATCTGGCAAAAACATCGAGATTGGTGTCATTGAGGCTGACAGAACATTCAGAGTCCTGACTGCAGCTCAAATTGAAGACTATCTTCAAGAGGTTGAGTAG 945 42.12 MKCNLLILRGPGLLPLGLSFPPSQQGIAYSLHKSSSPLNIHSHFFTSSSLISSRSKVFCHICLAVISDSFRSCADFLYDMGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDETSVQKIQILTPNIGVVYSGMGPDSRVLVRKSRKQAEQYQLLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVVGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTDDMELEDAIHTAILTLKEGFEGQISGKNIEIGVIEADRTFRVLTAAQIEDYLQEVE 314
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso29g00656 314 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 82 314 IPR029055 -
Smso29g00656 314 Pfam Proteasome subunit 110 292 IPR001353 GO:0005839(InterPro)|GO:0051603(InterPro)
Smso29g00656 314 Pfam Proteasome subunit A N-terminal signature 85 107 IPR000426 GO:0006511(InterPro)|GO:0019773(InterPro)
Smso29g00656 314 CDD proteasome-alpha-type-2 85 310 - -
Smso29g00656 314 ProSitePatterns Proteasome alpha-type subunits signature. 85 107 IPR000426 GO:0006511(InterPro)|GO:0019773(InterPro)
Smso29g00656 314 ProSiteProfiles Proteasome alpha-type subunit profile. 100 310 IPR023332 -
Smso29g00656 314 PANTHER PROTEASOME SUBUNIT ALPHA-BETA 83 311 IPR050115 GO:0010498(PANTHER)|GO:0019773(PANTHER)
Smso29g00656 314 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 84 313 IPR029055 -
Smso29g00656 314 FunFam Proteasome subunit alpha type 82 314 - -
Smso29g00656 314 SMART Proteasome-A-N-2 85 107 IPR000426 GO:0006511(InterPro)|GO:0019773(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso29g00656 K02726 20S proteasome subunit alpha 2 [EC:3.4.25.1]
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Event-related genes

Select Gene_1 Gene_2 Event_name
337155 Smso29g00656 Smso7g00505
353856 Smso7g00505 Smso29g00656
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr28:483502 Smso29g00656 Smso-Chr29:9233418 dispersed
Smso Smso-Chr29:9233418 Smso7g02212 Smso-Chr7:112460318 dispersed
Smso Smso-Chr20:56103560 Smso29g00656 Smso-Chr29:9233418 transposed
Smso Smso-Chr29:9233418 Smso7g00505 Smso-Chr7:8359729 wgd