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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso29g00741 ATGAAGCTCGTCAGGTTTTTGATGAAGTTGAACAACGAAACAGTCTCGATCGAGCTAAAAAACGGGACAGTTGTACATGGAACCATCACAGGTGTTGATATTAGCATGAACACGCACTTGAAGACGGTGAAGCTGACACTGAAAGGGAAAAATCCTGTAACCCTTGACCATTTGAGCGTGAGAGGCAATAACATTCGTTACTATATACTTCCCGACAGCTTGAATTTGGAGACTTTGCTAGTCGAAGAGACACCTAGAGTCAAGCCCAAGAAACCAACTGCAGGGCGACCTGTTGGACGTGGTCGGGGACGAGGGCGTGGCCGTGGACGCGGACGTGGGCGTTAG 345 48.99 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRGRGR 114
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso29g00741 114 MobiDBLite consensus disorder prediction 93 114 - -
Smso29g00741 114 Pfam LSM domain 5 69 IPR001163 -
Smso29g00741 114 MobiDBLite consensus disorder prediction 82 114 - -
Smso29g00741 114 Gene3D - 50 82 - -
Smso29g00741 114 Gene3D - 1 49 - -
Smso29g00741 114 SMART Sm3 5 70 IPR001163 -
Smso29g00741 114 FunFam Small nuclear ribonucleoprotein Sm D1 1 82 - -
Smso29g00741 114 CDD Sm-D1 2 93 IPR034102 GO:0000387(InterPro)
Smso29g00741 114 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 1 109 IPR027141 GO:0000243(PANTHER)|GO:0000387(PANTHER)|GO:0003723(PANTHER)|GO:0005682(PANTHER)|GO:0005685(PANTHER)|GO:0005686(PANTHER)|GO:0005687(PANTHER)|GO:0005689(PANTHER)|GO:0006396(InterPro)|GO:0034715(PANTHER)|GO:0034719(PANTHER)|GO:0071011(PANTHER)|GO:0071013(PANTHER)|GO:0097526(PANTHER)
Smso29g00741 114 ProSiteProfiles Sm domain profile. 2 74 IPR047575 GO:0003723(InterPro)
Smso29g00741 114 SUPERFAMILY Sm-like ribonucleoproteins 4 113 IPR010920 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso29g00741 K11087 small nuclear ribonucleoprotein D1
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Event-related genes

Select Gene_1 Gene_2 Event_name
337191 Smso29g00741 Smso7g00585
353891 Smso7g00585 Smso29g00741
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr17:2639331 Smso29g00741 Smso-Chr29:10943606 dispersed
Smso Smso-Chr29:10943606 Smso8g00271 Smso-Chr8:3720829 dispersed
Smso Smso-Chr29:10943606 Smso7g00585 Smso-Chr7:10174870 wgd