AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso29g00742 ATGTTGGAGAGCAGATTGATTACGATCATAAGGAGGACCAGATCCATCAATCAGATAAGATCATCTCACGGCGCTTTCAAAAATGTCTACAATCGTTTTTCACTGGATACTTGCTCAACTTACAAGAACGCTACTAACGCCACCGCCAGAAGCTCTTTCATCCATGGATTTCGATCCTTTCACAACCTCAACAAGGGTTCCTACAAGCCATCTTTTAGGTATATGTCCACTGTGGCTGCAAGTGCTTGTAAGGAAAATAAGGAGGCAGTGAAGCTTCTTGTTACTGCTGGACCTCATGCTCAGAAAGCAATAGGAATATGGCTTTTTGTATCGGCTGCATGGGTCTTCAGTATGGTTATTCTTGGTGGTGTCACACGACTTACACGATCTGGTCTTTCAATGACTGACTGGAAGTTTACTGGCAGCCTTCCTCCTTTATCAGATGAAGATTGGTTGATTGAGTTTGAGAAATATAAACAATCCCCTGAGTTCAAGCGTGTGAACAGGGGAATGAATATTGATGATTTTAAGTTCATTTATTGGATGGAATACGCGCATCGTATGTGGGGAAGGGCACTGGGTGTCATGTTTGCCCTCCCATTTTCGTATTTTATTCGAAAGGGTTATATTAATCTACGGCTTGGAGTTAGACTCGCGGGTCTATTTGCTCTTGGTGGTGGGCAAGGTTTGATTGGCTGGTGGATGGTTAAAAGTGGTTTAGAAGAGCCACCCTCAGAGTACTCTCAACCAAGAGTAAGCCCATATCGTCTAGCTGCACACCTGACTTCAGCTTTTGCTATATATTGTGGCCTCTTTTGGACTGCTCTTACTGTTGTTATGCCTGAACCTCCAACTGAGTCAATAGCTTGGGTCAAAGGGGCTGCAAAAGTCAAACGGTTTGCTCTTCCTGTTGGAATCATTGTTGGTATAACTGCGGTCTCAGGAGCTTTTGTGGCAGGAAATGATGCAGGACATTCATTTAATACATTTCCAAAGATGGGTGATTCATGGATCCCAGAAGATGTTTTGAGTATGAAGCCCCTTATCCGTAACTTCTTTGAGAACACAGCAACTGTGCAGCTTGATCACCGTATACTTGCAACCGCAACCCTAGCATCAATATGCGGTTTATGGTGGTCAACAAGAAAGATTGACCTACATCCTGCTGCCCGTTCTTTGATTGGAAGCACCGTAGGGATGGCTGCCCTCCAGGTTACTTTAGGCATTTCAACTCTTTTATCTTATGTGCCTGTTTCACTTGGCACAGCCCACCAAGCTGGGGCCTTGACTCTTTTAACATTTATGCTGCTCCTTAATCACACTTTGCGTCGACCATCACCAATCCTCTAA 1350 44.22 MLESRLITIIRRTRSINQIRSSHGAFKNVYNRFSLDTCSTYKNATNATARSSFIHGFRSFHNLNKGSYKPSFRYMSTVAASACKENKEAVKLLVTAGPHAQKAIGIWLFVSAAWVFSMVILGGVTRLTRSGLSMTDWKFTGSLPPLSDEDWLIEFEKYKQSPEFKRVNRGMNIDDFKFIYWMEYAHRMWGRALGVMFALPFSYFIRKGYINLRLGVRLAGLFALGGGQGLIGWWMVKSGLEEPPSEYSQPRVSPYRLAAHLTSAFAIYCGLFWTALTVVMPEPPTESIAWVKGAAKVKRFALPVGIIVGITAVSGAFVAGNDAGHSFNTFPKMGDSWIPEDVLSMKPLIRNFFENTATVQLDHRILATATLASICGLWWSTRKIDLHPAARSLIGSTVGMAALQVTLGISTLLSYVPVSLGTAHQAGALTLLTFMLLLNHTLRRPSPIL 449
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso29g00742 449 PANTHER CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX15 54 447 IPR023754 GO:0005743(PANTHER)|GO:0006784(PANTHER)|GO:0006784(InterPro)|GO:0016020(InterPro)|GO:0016653(InterPro)|GO:0016653(PANTHER)
Smso29g00742 449 Hamap Heme A synthase [ctaA]. 101 445 IPR023754 GO:0006784(InterPro)|GO:0016020(InterPro)|GO:0016653(InterPro)
Smso29g00742 449 Pfam Cytochrome oxidase assembly protein 106 435 IPR003780 GO:0006784(InterPro)|GO:0016020(InterPro)|GO:0016653(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso29g00742 K02259 heme a synthase [EC:1.17.99.9]
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Event-related genes

Select Gene_1 Gene_2 Event_name
337192 Smso29g00742 Smso7g00586
353892 Smso7g00586 Smso29g00742
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr29:10949071 Smso7g00586 Smso-Chr7:10181064 wgd