Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Smso29g00744	ATGGCTCTATTAAGCGCTCCACCGCCTTCTACTCCTGATATTCCATCTCAATCATCCATGCCTTTGCCGTCAGTTCCTACACATAACCCTAATTTTAACGCTCCGTCGCCAGGTCCGTTGCGGATGCCGAGCAGTAAGCTACCGAAGGGACGGCATTTGATCGGTGATCGCGCTGTTTATGACATTGATGCTAGGTTGCCTGGAGAGGCTCAGCCGCAACTTGAGGTCACTCCGATTACCAAATATGGTTCGGATCCTAATTTGGTGCTAGGTCGTCAGATTGCTGTTAACAAGACCTATATATGTTACGGTTTGAAACCAGGAACAATTAGGGTTCTTAATATAAACACTGCATTGAGATCACTGCTTAAAGGTCTTGTTCAGAGGGTTACAGATATGTCTTTCTTTGCAGAGGATGTTCATCTTCTAGCCAGTACAAGCATGGATGGACGAGTTTACGTATGGAAGATCATAGAAGTTCCTGATGAAGATGATAAGCCACAAATTACAGGAAAAATAGTTATTGCTGTTCAAATTCTAGGAGGAGAACCTGTTCATCCGCGGGTTTGTTGGCACTGCCATAAACAAGAAGTTCTTGTAGTTGGAATCGGGAATCGTATTCTTAGATTTGATACTACAAAGGTTGGGAGAGGTAAACTATACTCAGCAGAAGAACCTCTCAATTGCACTGTTGATAAGTTGATTGATGGAATTCATTTTGTTGGTAAGCATGCTGGTGAAATTACAGATATATCCATGTGTCAATGGATGACTACTCGTCTAGTTTCTGCTTCAGTAGATGGAACGATAAAGATTTGGGACGATAGGAAGTCGTCACCTATTGCAGTACTGAGGCCACACGATGGCCTTCCTGTTATGTCTGTTACATTCTTAACTGCTCCACATCGCCCAGATCACATCATACTTATCACAGGGGGCCTGTTGAATCATGAAGTGAAAATATGGGCCTCTGAAAGTGAAGAAGGATGGTTGCTTCCTAGTGATGCTGATTCATGGCATTGTACTCAAACATTGGAGTTGAAAAGCTCCGCTGAATCTAGAGTCGAAGATGCGTTTTTTAATCAAGTGGTTGCATTATCTCAATCTGGGCTTCTTTTACTAGCAAATGCCAAGAGAAACGCTATATATGCTATACACTTGGATTACGGGCCCAATCCAGAAACAACCCGTTTGGACTACATTGCAGAGTTCACTGTTACTATGCCAATATTGAGCTTTACTGGCACAAGTGATCTGTTAGCAAACGGGTACAACATTGTTCAGGTTTATTGTGTCCAGACACAAGCCATTCAACAATATGCTTTAGACTTATCCCAGTGCCTACCACCTCCTGTTTATGATATCTATGAGAAATCTGGTTCAACGGTTTTACACGACACAACGATTATTGGTTTGGAACCATCTGGTGGTAAATTGGATGAGATGTCTCAGGCTAGCCCAGGACCTAGCCCGAGACATTTCCCAGATGGGGCATCTGCATTGAGCCCTAACGAGCTGAAGGACACTGATACAGATGTTTCATGTATTGAATCATCACCAACGGTTCAATTGAGATCTAAATTGTCAGGAAAAGTTTCTGACTTTAGAAGTCCATCTGGCAGGTTTGAGCCACACCAGCAACTAAATGGTTATGATGATCAGAAGATCATGGGAGAAATACAATTGGAAACTGATCGTTCAAACATGTCTAATGCCACCTTGTTGGATGACGATGATGATCGGGCGATCAAGTTTAAGCATCCAACTCATCTGGTAACTCCTGCTGAATTGATGGCCACATCATCCTCTGAAGTAAATCATGTTGACGCTATGCATGATGTGGCAGTAAACTCTGGTACACAGAATGCTGAGGTGGAGGTTAAGGTTGTGGGTGAAATGGGAATGAATCAAAATGCTGATATTGCCTTGAAAATTGAACTTAACGGTTCTGCTTATGAAGAAAAGGAAAAATCTAGAACTTTCTCCTCACAGGCATCAGGACTTGGGCTTGATATGGCACGAGATAATGAATCTAAACAATTGGATCAGATTGCAGATGCTCGAGATGAAGTTGATGATGTGGCAACTGATCTAGCTGGATCGGTTGAGATGGTTGCAACTGGAGTAGTTCAATCTGTGGGTCCCTCTTCACGAGAAAAAAAGAAAAAGAAAAAGAGTGCCCAAGTATCAGGTCAATCTTCTTCTTCAAGTATCTTAAAGTCAACTAATTCTTATGATGAGCTAGGAGTGAGTTCAAGTGTTCCATCAGCAGAAGTTATACTTTCACAAATTCAGTCCATGCAAGAAACACTAAATCAGGTTTTGATCAATCAAAAGGAAATCCAGAAGCAGATTCCAGTGGTTTCTGCAGTACCAATTACAAAAGAAGGGAAAAGAATCGAGGCAGCCATTGGTAAAAGCATGGAGAAAATTCATAAAGCTAATTCTGATGCTTACTTGGCTCGTTTTCAAGAAGAGTTTGCAAAACAGGAAAAGTCAAACAAAGACCACCATCAGCAAATATCGAATTCCGCCTCTAATGGTCACAAAGAATTTCTTGCAGCATCAGAGAAAATGCTCAAGAAGGAAATGGCTGCAGTGGTGCCAGTTGTTGGGCGCTCAGTAATTCCAATTATTGAGAAAGCAGTCTCTACAGCTGTCTCAGAGGCTTTCCAGAGGGGAATAGGTGATAAAGCTGTAAATCAACTGGACAAAGCAGTTAATTCCAAACTGGAAGCTACTGTATCTAGGCAAATTCAAGTTCAATTTCAAACTTCTGGCAAACAAGCTCTACAGGAAGCACTGAGGTCAAGTATGGAGACTTCTGTTGTTCCTGCGTTTGACATGTCTTGCAAGTCGATGTTTGACCAAGTTGATGCCACATTTCACAAGGGAATGATTGAACACACAACTGCAATTCAGCAGCAAGTTGAGTCCATGCATTCTCCTCTGGCATTTGCTTTGAGGGATACCATCAATTCAGCATCATCTCTGAGTCAAACATTGAACAGTGAATTTGCTGAGAGTCAAAGAAAGTTAATGGCTCTTGCAGTTGCTGGAGCAAATTCTAAATCAGCAAATCCATTGATAAGCCAACTAAGCAACGGGCCTCCAGGTGTTTTCCATGAAAAGATTGAAGCACCAGTGGACCCCACAAAAGAGCTATCTAGGTTGGCGTATGAGCACAAATTTGAAGAGGCCTTTACTGCTGCCCTGCAAAGAAGTGATGTTCGCATAGTGTCCTGGTTATGCTCTCAGGTTGATCTACAGGGGATATTAACGAGTAATCCCGTTCCTCTGAGCCAAGGGGTACTGCTATCATTATTGCAGCAATTAGCATGTGATATTGGGAACGATACATCTAAGAAACTTGGTTGGATGATGGATGTGGTGGTGGCTATCAAACCAACGGACGGGATCATTGCATTGCATGTAAGGCCTATATTTGAACAAGTGTACTCGATTCTAAACCATCAGATGAGTGTTCCCACGACTTCGGTTGCTGAGCTTTCCAGTATCCGTGTGGTCATGAAACTCGTAAACTCGACGTTAAGGAGCCTGTAA	3564	42.42	MALLSAPPPSTPDIPSQSSMPLPSVPTHNPNFNAPSPGPLRMPSSKLPKGRHLIGDRAVYDIDARLPGEAQPQLEVTPITKYGSDPNLVLGRQIAVNKTYICYGLKPGTIRVLNINTALRSLLKGLVQRVTDMSFFAEDVHLLASTSMDGRVYVWKIIEVPDEDDKPQITGKIVIAVQILGGEPVHPRVCWHCHKQEVLVVGIGNRILRFDTTKVGRGKLYSAEEPLNCTVDKLIDGIHFVGKHAGEITDISMCQWMTTRLVSASVDGTIKIWDDRKSSPIAVLRPHDGLPVMSVTFLTAPHRPDHIILITGGLLNHEVKIWASESEEGWLLPSDADSWHCTQTLELKSSAESRVEDAFFNQVVALSQSGLLLLANAKRNAIYAIHLDYGPNPETTRLDYIAEFTVTMPILSFTGTSDLLANGYNIVQVYCVQTQAIQQYALDLSQCLPPPVYDIYEKSGSTVLHDTTIIGLEPSGGKLDEMSQASPGPSPRHFPDGASALSPNELKDTDTDVSCIESSPTVQLRSKLSGKVSDFRSPSGRFEPHQQLNGYDDQKIMGEIQLETDRSNMSNATLLDDDDDRAIKFKHPTHLVTPAELMATSSSEVNHVDAMHDVAVNSGTQNAEVEVKVVGEMGMNQNADIALKIELNGSAYEEKEKSRTFSSQASGLGLDMARDNESKQLDQIADARDEVDDVATDLAGSVEMVATGVVQSVGPSSREKKKKKKSAQVSGQSSSSSILKSTNSYDELGVSSSVPSAEVILSQIQSMQETLNQVLINQKEIQKQIPVVSAVPITKEGKRIEAAIGKSMEKIHKANSDAYLARFQEEFAKQEKSNKDHHQQISNSASNGHKEFLAASEKMLKKEMAAVVPVVGRSVIPIIEKAVSTAVSEAFQRGIGDKAVNQLDKAVNSKLEATVSRQIQVQFQTSGKQALQEALRSSMETSVVPAFDMSCKSMFDQVDATFHKGMIEHTTAIQQQVESMHSPLAFALRDTINSASSLSQTLNSEFAESQRKLMALAVAGANSKSANPLISQLSNGPPGVFHEKIEAPVDPTKELSRLAYEHKFEEAFTAALQRSDVRIVSWLCSQVDLQGILTSNPVPLSQGVLLSLLQQLACDIGNDTSKKLGWMMDVVVAIKPTDGIIALHVRPIFEQVYSILNHQMSVPTTSVAELSSIRVVMKLVNSTLRSL	1187

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Smso29g00744	1187	SUPERFAMILY	WD40 repeat-like	80	388	IPR036322	GO:0005515(InterPro)
	Smso29g00744	1187	PANTHER	ENHANCER OF MRNA-DECAPPING PROTEIN 4	1	1186	IPR045152	GO:0000932(PANTHER)\|GO:0031087(PANTHER)\|GO:0031087(InterPro)
	Smso29g00744	1187	MobiDBLite	consensus disorder prediction	1	48	-	-
	Smso29g00744	1187	Pfam	Enhancer of mRNA-decapping protein 4, C-terminal	1058	1163	IPR049404	-
	Smso29g00744	1187	MobiDBLite	consensus disorder prediction	474	512	-	-
	Smso29g00744	1187	ProSiteProfiles	Trp-Asp (WD) repeats profile.	241	283	IPR001680	GO:0005515(InterPro)
	Smso29g00744	1187	Gene3D	-	91	444	IPR015943	GO:0005515(InterPro)
	Smso29g00744	1187	MobiDBLite	consensus disorder prediction	828	848	-	-
	Smso29g00744	1187	Coils	Coil	820	840	-	-
	Smso29g00744	1187	FunFam	Enhancer of mRNA-decapping protein 4	1100	1186	-	-
	Smso29g00744	1187	Gene3D	-	1100	1186	IPR044938	-
	Smso29g00744	1187	Coils	Coil	764	784	-	-
	Smso29g00744	1187	SMART	WD40-4	277	323	IPR001680	GO:0005515(InterPro)
	Smso29g00744	1187	SMART	WD40-4	116	156	IPR001680	GO:0005515(InterPro)
	Smso29g00744	1187	SMART	WD40-4	235	274	IPR001680	GO:0005515(InterPro)
	Smso29g00744	1187	Pfam	WD40 region of Ge1, enhancer of mRNA-decapping protein	76	387	IPR032401	-
	Smso29g00744	1187	MobiDBLite	consensus disorder prediction	709	740	-	-
	Smso29g00744	1187	FunFam	enhancer of mRNA-decapping protein 4	75	388	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Smso29g00744	K12616	enhancer of mRNA-decapping protein 4

Event-related genes

Select	Gene_1	Gene_2	Event_name
	148266	Smso18g01823	Smso29g00744
	148969	Smso1g02415	Smso29g00744
	337194	Smso29g00744	Smso7g00589
	353894	Smso7g00589	Smso29g00744

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Smso	Smso-Chr25:12497986	Smso29g00744	Smso-Chr29:10975056	dispersed
	Smso	Smso-Chr18:10939932	Smso29g00744	Smso-Chr29:10975056	transposed
	Smso	Smso-Chr18:76611244	Smso29g00744	Smso-Chr29:10975056	wgd
	Smso	Smso-Chr29:10975056	Smso7g00589	Smso-Chr7:10243852	wgd
	Smso	Smso-Chr29:10975056	Smso9g00524	Smso-Chr9:12133166	wgd