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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso4g00454 ATGCCGACTTTAACAAAGCTATACTCGATGAAAGAAGCTTCAGAGCACAATTCCGCCGGCGATTGCTGGATTGTTGTCGACGGCAAGGTTTATGACGTGTCAGCATATCTGGAAGAACACCCAGGTGGTGATGATGTCCTCCTACAAGCTACAGGGAAAGATGCGACAGACGAATTTGAAGACGCGGGCCATAGCAAGAGTGCCAGGGAACTTATGGAGACTTTCTGTGTTGGTGAGCTGGACACGTCAGACATCCCTCAACTTGAAGTAATCTCAGAGAAGCAAAAAACTTACATCCCTGAGAAGCTGGTTCAGCTGAGCAAGCAATATTGGGTGGCTCCGGCGGCAGCTGTCGGCATATCGGTGGTTGTCACCTTCCTGTACCTACGCAACAAGTAG 399 49.62 MPTLTKLYSMKEASEHNSAGDCWIVVDGKVYDVSAYLEEHPGGDDVLLQATGKDATDEFEDAGHSKSARELMETFCVGELDTSDIPQLEVISEKQKTYIPEKLVQLSKQYWVAPAAAVGISVVVTFLYLRNK 132
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso4g00454 132 Gene3D - 3 86 IPR036400 -
Smso4g00454 132 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Smso4g00454 132 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Smso4g00454 132 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Smso4g00454 132 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Smso4g00454 132 SUPERFAMILY Cytochrome b5-like heme-steroid binding domain 4 90 IPR036400 -
Smso4g00454 132 FunFam Cytochrome b5 type B 3 85 - -
Smso4g00454 132 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Smso4g00454 132 SMART Cyt-b5-2 8 81 IPR001199 -
Smso4g00454 132 PANTHER CYTOCHROME B5 4 123 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Smso4g00454 132 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Smso4g00454 132 Pfam Cytochrome b5-like Heme-Steroid binding domain 10 81 IPR001199 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso4g00454 K23490 cytochrome b5
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Event-related genes

Select Gene_1 Gene_2 Event_name
150138 Smso21g00485 Smso4g00454
344583 Smso21g00485 Smso4g00454
355246 Smso4g00454 Smso21g00485
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4991886 Smso Smso4g00454 Smso-Chr4:5962573 Smso5g01289 Smso-Chr5:67688969
5080826 Smso Smso21g00485 Smso-Chr21:4967942 Smso4g00454 Smso-Chr4:5962573
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Smso28g00012 ACH,SST,WGDA 31 281 NADPH P450 reductases gene family AT5G17770 76.892 1.23e-144 405.0
Smso27g02500 SST 6 131 NADPH P450 reductases gene family AT2G32720 35.075 1.84e-17 70.5
Smso26g00521 . 1 134 NADPH P450 reductases gene family AT5G53560 57.037 9.28e-51 157.0
Smso26g00889 ACH,WGDA 5 133 NADPH P450 reductases gene family AT2G32720 72.868 4.36e-72 210.0
Smso26g00974 ACH,WGDA 4 281 NADPH P450 reductases gene family AT5G17770 76.978 2.17e-157 441.0
Smso25g01661 SST 2 132 NADPH P450 reductases gene family AT5G53560 61.654 3.05e-59 178.0
Smso25g02701 . 1 128 NADPH P450 reductases gene family AT5G53560 59.701 1.36e-55 168.0
Smso25g02702 . 1 121 NADPH P450 reductases gene family AT5G53560 56.557 6.94e-42 135.0
Smso25g02703 . 1 126 NADPH P450 reductases gene family AT5G53560 55.906 1.94e-48 151.0
Smso25g02704 . 1 127 NADPH P450 reductases gene family AT5G53560 54.688 3.54e-47 149.0
Smso24g00184 SST 39 281 NADPH P450 reductases gene family AT5G17770 40.996 1.81e-65 206.0
Smso24g01003 . 1 133 NADPH P450 reductases gene family AT5G53560 68.421 2.19e-67 198.0
Smso22g01075 SST,WGDA 38 273 NADPH P450 reductases gene family AT5G17770 40.31 2.40e-50 177.0
Smso21g00485 ACH,SST 52 88 NADPH P450 reductases gene family AT1G26340 67.568 2.19e-12 57.8
Smso21g02056 ACH,SST 1 133 NADPH P450 reductases gene family AT5G53560 72.932 2.64e-70 206.0
Smso20g01042 ACH,SST,WGDA 5 133 NADPH P450 reductases gene family AT2G32720 72.868 7.70e-72 209.0
Smso20g01186 ACH,SST,WGDA 31 281 NADPH P450 reductases gene family AT5G17770 82.54 8.85e-160 444.0
Smso18g02758 SST 1 132 NADPH P450 reductases gene family AT5G53560 47.727 8.06e-42 133.0
Smso17g02013 . 161 273 NADPH P450 reductases gene family AT5G17770 41.739 5.16e-24 100.0
Smso15g01189 . 131 273 NADPH P450 reductases gene family AT5G17770 40.645 2.53e-31 122.0
Smso15g01193 WGDA 131 273 NADPH P450 reductases gene family AT5G17770 40.645 2.53e-31 122.0
Smso15g01194 . 131 273 NADPH P450 reductases gene family AT5G17770 40.645 2.66e-31 122.0
Smso14g00623 . 1 130 NADPH P450 reductases gene family AT5G53560 54.198 2.46e-48 152.0
Smso14g00624 . 1 126 NADPH P450 reductases gene family AT5G53560 54.331 9.45e-47 146.0
Smso14g00625 . 1 131 NADPH P450 reductases gene family AT5G53560 51.908 2.21e-41 137.0
Smso14g00626 . 1 128 NADPH P450 reductases gene family AT5G53560 56.716 5.96e-54 164.0
Smso14g01285 SST,WGDA 38 273 NADPH P450 reductases gene family AT5G17770 40.698 4.54e-51 179.0
Smso14g02040 . 42 85 NADPH P450 reductases gene family AT5G17770 70.455 6.98e-14 67.0
Smso10g00892 ACH,SST,WGDA 5 133 NADPH P450 reductases gene family AT2G32720 73.643 7.13e-72 209.0
Smso10g01017 ACH,SST,WGDA 31 281 NADPH P450 reductases gene family AT5G17770 81.746 4.94e-158 439.0
Smso10g01741 . 2 120 NADPH P450 reductases gene family AT1G60660 64.706 8.46e-51 155.0
Smso10g03915 . 31 281 NADPH P450 reductases gene family AT5G17770 78.486 7.47e-148 413.0
Smso9g00004 SST 1 98 NADPH P450 reductases gene family AT5G53560 45.918 2.51e-27 95.9
Smso8g02265 . 37 113 NADPH P450 reductases gene family AT2G32720 46.154 4.54e-16 66.2
Smso8g03048 SST 5 132 NADPH P450 reductases gene family AT5G53560 63.636 2.31e-57 173.0
Smso7g01267 . 2 120 NADPH P450 reductases gene family AT1G60660 63.866 8.43e-51 157.0
Smso7g02235 ACH 31 281 NADPH P450 reductases gene family AT5G17770 78.884 2.22e-149 417.0
Smso5g00186 SST 39 281 NADPH P450 reductases gene family AT5G17770 40.996 5.56e-65 204.0
Smso5g00371 . 1 75 NADPH P450 reductases gene family AT5G53560 29.114 1.51e-07 46.6
Smso5g01289 . 1 133 NADPH P450 reductases gene family AT5G53560 69.173 8.63e-69 202.0
Smso4g00454 ACH,SST 1 134 NADPH P450 reductases gene family AT1G26340 60.448 1.40e-57 173.0
Smso4g02134 ACH,SST 1 133 NADPH P450 reductases gene family AT5G53560 72.932 2.17e-71 208.0
Smso3g02807 SST 6 130 NADPH P450 reductases gene family AT2G32720 44.776 1.24e-35 118.0
Smso1g01009 . 6 83 NADPH P450 reductases gene family AT1G26340 38.462 1.26e-14 66.2
Smso1g04330 ACH,SST,WGDA 42 281 NADPH P450 reductases gene family AT5G17770 66.116 8.58e-110 316.0