AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Smso4g00463 | ATGGAAGAATCAAGAAATCCATTTCTTCAGTCTGTTGAATCTGCTAATGGTTATAGCTCAAGATTCAGCCATGATAAACATGGGCGCCACAACTTCATTGGGCCTGGTTTTCCAGGGTTGAGAAAAAGAGGTCATACGCTTGGAAACCGTTCTTGGATTAAAATTGAGCAAAATGGGAACTCTAAAGTTGTGGAGTTAGATAAGGCTACTGTAATGAGACATTGTTCTTTACCTGCTAGAGATCTTCGTCTTTTGGATCCACTTTTTATATATCCATCCACAATATTAGGTCGTGAGAAGGCGATTGTAGTTAGTCTTGAACAGATTAGATGTATAATCACAGCTGATGAGGTTTTTCTTATGAATTCATTGGATGGATCTGTAGTTCAGTACAAATCTGAATTGTGTAAACGCCTTCAGAAAGAGAAATATCACTCAGATGGCCTACCATTTGAGTTTAGAGCATTGGAACTAGCTTTGGAGTTTGCATGCCTCACTCTGGATACTCAGGTGAAAGAGTTGGAAATGGAAATTCATCCTGTGCTTGATGAACTTGCAAAATCTATAAGTACTCTCAATCTTGAACGTGTTCGTAGATTCAAAGGCCACCTTCTAGCATTGACTCAACGGGTGCAAAAGGTTTGTGACGAAATAGAACATCTAATGAATGATGATGGTGATATGGCTGAGATGTACTTAACTGAGAAGAAACAAAGGAACTCGTGTAACGATTTATACGATCAAGTACAAGGAAATGGTATTATTGGGCCTGCAGTGGGCTTAGGATCGAAATCTGCTCCAGTATCTCCTGTGGGATCCACAAGTGATGCAAATAAACTTCAAAGGGCGTTTAGTAATGTAAGTTCACACAAGCATGGAAGTTTGTTCGGTTCATCTGTGACTGGTGAAACTGAAAATATAGATCAACTTGAGATGTTGCTGGAAGCCTATTTTGTTGGAATTGATAACACTCTAAACAAGTTGCTTTCGCTCAAGGAGTATATTGATGACACTGAAGATCTGATCAACATTAAACTTGGAAATGTCCAGAATAAGCTGATTAAGTTTGAGCTGCTCTTGACAGCGGCTACATTTTTGGCAACTGTATTTGCAGTTGTGACAGCTGTGTTTGGAATGAACTTTGAAGATGAAGTTTTCGATGAGCCTAACAGATTTCATTGGGTCGTTTCTATCAGTGCAGTGTTATGTGGAATTTTGTATATCTGTTTCTTGCTTTATTTTAAACATAAGAAGGTTTTCCCTCTCTAG | 1269 | 38.69 | MEESRNPFLQSVESANGYSSRFSHDKHGRHNFIGPGFPGLRKRGHTLGNRSWIKIEQNGNSKVVELDKATVMRHCSLPARDLRLLDPLFIYPSTILGREKAIVVSLEQIRCIITADEVFLMNSLDGSVVQYKSELCKRLQKEKYHSDGLPFEFRALELALEFACLTLDTQVKELEMEIHPVLDELAKSISTLNLERVRRFKGHLLALTQRVQKVCDEIEHLMNDDGDMAEMYLTEKKQRNSCNDLYDQVQGNGIIGPAVGLGSKSAPVSPVGSTSDANKLQRAFSNVSSHKHGSLFGSSVTGETENIDQLEMLLEAYFVGIDNTLNKLLSLKEYIDDTEDLINIKLGNVQNKLIKFELLLTAATFLATVFAVVTAVFGMNFEDEVFDEPNRFHWVVSISAVLCGILYICFLLYFKHKKVFPL | 422 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Smso4g00463 | 422 | Pfam | Magnesium transporter MRS2-like | 57 | 240 | - | - | |
| Smso4g00463 | 422 | Gene3D | Magnesium transport protein CorA, transmembrane region | 126 | 353 | - | - | |
| Smso4g00463 | 422 | PANTHER | RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL | 37 | 419 | IPR039204 | GO:0015095(PANTHER)|GO:0015693(PANTHER) | |
| Smso4g00463 | 422 | CDD | Mrs2-Mfm1p-like | 52 | 419 | IPR039204 | - | |
| Smso4g00463 | 422 | Gene3D | Magnesium transport protein CorA, transmembrane region | 360 | 418 | - | - | |
| Smso4g00463 | 422 | Gene3D | - | 43 | 123 | - | - | |
| Smso4g00463 | 422 | FunFam | Magnesium transporter MRS2-1 | 39 | 123 | - | - | |
| Smso4g00463 | 422 | SUPERFAMILY | Magnesium transport protein CorA, transmembrane region | 359 | 411 | IPR045863 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Smso4g00463 | K16075 | magnesium transporter |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Smso | Smso-Chr23:64553750 | Smso4g00463 | Smso-Chr4:6062959 | dispersed | |
| Smso | Smso-Chr27:5986655 | Smso4g00463 | Smso-Chr4:6062959 | dispersed | |
| Smso | Smso-Chr2:113673491 | Smso4g00463 | Smso-Chr4:6062959 | dispersed | |
| Smso | Smso-Chr3:6987330 | Smso4g00463 | Smso-Chr4:6062959 | dispersed | |
| Smso | Smso-Chr4:6062959 | Smso8g01213 | Smso-Chr8:21821912 | dispersed | |
| Smso | Smso-Chr21:5031315 | Smso4g00463 | Smso-Chr4:6062959 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Smso29g00934 | . | 1 | 436 | MRS2 gene family | AT3G58970 | 66.083 | 0.0 | 562.0 | |
| Smso27g00394 | . | 118 | 442 | MRS2 gene family | AT1G16010 | 72.892 | 2.74e-162 | 458.0 | |
| Smso26g01636 | . | 1 | 436 | MRS2 gene family | AT3G58970 | 66.302 | 0.0 | 550.0 | |
| Smso26g02211 | . | 6 | 386 | MRS2 gene family | AT5G09690 | 73.438 | 0.0 | 547.0 | |
| Smso24g00803 | . | 383 | 445 | MRS2 gene family | AT3G19640 | 79.365 | 1.01e-28 | 106.0 | |
| Smso24g00807 | . | 47 | 484 | MRS2 gene family | AT3G19640 | 66.377 | 0.0 | 570.0 | |
| Smso23g00159 | ACH,SST | 123 | 459 | MRS2 gene family | AT5G22830 | 75.74 | 5.38e-172 | 489.0 | |
| Smso23g01443 | . | 1 | 442 | MRS2 gene family | AT1G16010 | 74.273 | 0.0 | 654.0 | |
| Smso22g02392 | . | 1 | 442 | MRS2 gene family | AT1G16010 | 77.354 | 0.0 | 674.0 | |
| Smso21g00494 | . | 1 | 421 | MRS2 gene family | AT2G03620 | 65.197 | 1.37e-180 | 508.0 | |
| Smso20g00989 | . | 47 | 484 | MRS2 gene family | AT3G19640 | 50.339 | 2.78e-128 | 375.0 | |
| Smso18g01347 | . | 47 | 484 | MRS2 gene family | AT3G19640 | 61.013 | 0.0 | 526.0 | |
| Smso17g00295 | SST | 1 | 314 | MRS2 gene family | AT5G09690 | 62.349 | 8.53e-124 | 358.0 | |
| Smso17g03414 | . | 1 | 442 | MRS2 gene family | AT1G16010 | 79.866 | 0.0 | 701.0 | |
| Smso16g01429 | . | 311 | 484 | MRS2 gene family | AT3G19640 | 62.57 | 5.30e-70 | 219.0 | |
| Smso14g02740 | . | 1 | 442 | MRS2 gene family | AT1G16010 | 77.578 | 0.0 | 674.0 | |
| Smso13g00438 | . | 1 | 436 | MRS2 gene family | AT3G58970 | 66.521 | 0.0 | 559.0 | |
| Smso10g00849 | . | 38 | 440 | MRS2 gene family | AT1G80900 | 43.72 | 6.60e-98 | 296.0 | |
| Smso10g03511 | . | 47 | 484 | MRS2 gene family | AT3G19640 | 66.74 | 0.0 | 568.0 | |
| Smso9g00811 | . | 47 | 484 | MRS2 gene family | AT3G19640 | 60.573 | 0.0 | 523.0 | |
| Smso8g00326 | SST | 1 | 386 | MRS2 gene family | AT5G09690 | 65.404 | 4.03e-178 | 499.0 | |
| Smso8g01213 | . | 1 | 442 | MRS2 gene family | AT1G16010 | 79.195 | 0.0 | 691.0 | |
| Smso7g00791 | . | 108 | 436 | MRS2 gene family | AT3G58970 | 69.971 | 3.21e-160 | 453.0 | |
| Smso6g02437 | . | 6 | 386 | MRS2 gene family | AT5G09690 | 73.177 | 0.0 | 550.0 | |
| Smso5g00870 | . | 47 | 484 | MRS2 gene family | AT3G19640 | 65.0 | 0.0 | 561.0 | |
| Smso4g00463 | . | 1 | 421 | MRS2 gene family | AT2G03620 | 65.287 | 3.92e-180 | 507.0 | |
| Smso3g00401 | . | 1 | 442 | MRS2 gene family | AT1G16010 | 76.957 | 0.0 | 667.0 | |
| Smso2g00249 | ACH,SST | 123 | 431 | MRS2 gene family | AT5G22830 | 50.0 | 5.27e-69 | 221.0 | |
| Smso2g02714 | . | 1 | 442 | MRS2 gene family | AT1G16010 | 74.497 | 0.0 | 654.0 |