AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso4g00465 ATGAAAGATGTGGCACTCACGGACAAGAAAGCCACGGACGCTCGCATTGCGGGTTCATTCCTGGTAGTCAAAGACGCTAAACGCAAAGGCCTTGCTTATGGGGAAAAAGAACACACTCCGAGCATATTTCTGAATCGATTTAAAGTACATGGAGATATGATTCAAGTTCTAGGGTTCACTTTGCTAGTAGGGTTTTGGGTTTTGTTAAGCCTAGAAGAGGTGACATCACATGGAGATCATCCTTTTGCAAAAATTGGCATACATCAAGTGACATTTGCTCTAAGTGATGCTGCCTATGTCAAAGCTTCTCCTGCAATTCTAGGATCAAAAGACCAAAATTCTGAATGGGTGACTGTATATATTAGTTCATATAGTCTATTTGAAGCTAACAGTGATTCAACTTGCCTTCCTGAAAATTCAAGATTAAGCCCTCCATATTTGTGCTCTGCGCCTATTAAGTTTCAATATGCAAATTACACCAATCCTGATTACAAGTTTACAGGAGAAGCATCATTAAAGCTTCAATTGATCAACCAAAGATCTGATTTCTCTTTTGCATTATTCACAGGAGGATTATCAACTCCAATTCTTGTGGCAGTTTCAAATACAGTTGCTTTTGAAAACCCAAACGCACCAATTTACCCACGGTTAGCTCAAGGAAAGATGTGGGATGAAATGACTGTAACATGGACAAGTGGATATGGAATCACTGAAGCAGAGCCTTTTGTCGAATGGGGTAAAATAGGTGGAGACCAGAGGCATTCTTCTGCTGGAACTTTGACTTTTGACCGCCGTAGCACTGGTGCACCAGCAAGAACTGTGGGTTGGCGTGATCCTGGCTATATTCATACTAGCTTCTTGAAAGACTTATGGCCCAATCAAGTGTATACATACAAGCTAGGGCACAAATTGTTGAATGTTACAACCATCTGGAGCTAG 939 41.11 MKDVALTDKKATDARIAGSFLVVKDAKRKGLAYGEKEHTPSIFLNRFKVHGDMIQVLGFTLLVGFWVLLSLEEVTSHGDHPFAKIGIHQVTFALSDAAYVKASPAILGSKDQNSEWVTVYISSYSLFEANSDSTCLPENSRLSPPYLCSAPIKFQYANYTNPDYKFTGEASLKLQLINQRSDFSFALFTGGLSTPILVAVSNTVAFENPNAPIYPRLAQGKMWDEMTVTWTSGYGITEAEPFVEWGKIGGDQRHSSAGTLTFDRRSTGAPARTVGWRDPGYIHTSFLKDLWPNQVYTYKLGHKLLNVTTIWS 312
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso4g00465 312 SUPERFAMILY Purple acid phosphatase, N-terminal domain 189 309 IPR008963 GO:0003993(InterPro)|GO:0046872(InterPro)
Smso4g00465 312 PANTHER PURPLE ACID PHOSPHATASE-RELATED 81 311 - -
Smso4g00465 312 Pfam Purple acid Phosphatase, N-terminal domain 216 303 IPR015914 GO:0003993(InterPro)|GO:0046872(InterPro)
Smso4g00465 312 Gene3D - 211 311 - -
Smso4g00465 312 Pfam Fn3-like domain from Purple Acid Phosphatase 100 208 IPR040974 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso4g00465 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4991894 Smso Smso4g00465 Smso-Chr4:6070717 Smso6g00144 Smso-Chr6:1678981
5018578 Smso Smso4g00465 Smso-Chr4:6070717 Smso21g00495 Smso-Chr21:5035992