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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso5g02204 ATGGCTCTTTTGGAATTGAACAAGAACAGAGGGGAGGTGAGAATTCATGAAAGTTTGGAAGAACTCAGCACAGATTTGGCTGATTACATAGCAGAATTATCTGAGGCATCGGTTAAAGAACGCGGGTTTTTTGCCATTGCTTTATCTGGTGGCTCCATCATTACCTTGATGAGGAATCTGTGTGGAGCTCCTTATAACAAGACTGTTGATTGGTCCAAATGGTATATATTTTGGGCCGATGAACGCGTGGTTTCCAAGAGTCATGTTGATAGCAACTATAAGCTTGCTAAGGATCATCTCTTATCTAAGTTGCCTATTGTTCCAAGTCATGTACATTCCATCAATGATTCTCTCACTGCAGAAGAAGCTGCAAACGAGTACGAGTTTGTGATCAGACAACTGGTCAGGACCCGTGTGGTCAACGTGTCTGATGTCAGCGACTGCCCGAAGTTTGACCTAATCCTTCTAGGGATGGGGCCCGATGGCCACGTGGCGTCTTTGGTCCCTGACCATCCGGTTCTTGAAGAAAAGAATGAATGGGTGACATTCATCACCACTTGCCCTAAGCCACCACCCGAAAGAATCACCTTCACCCTGCCTGTAATCAACTCTGCTGCCAATGTGGCGGTGGTGGCGACAGGTGGTGAGAAAGCGGAAGCTGCCTGGCTGGCTATAGATGATGTGGGACCTGAGTGCCCGGTGTTGCCAGCTAGGATGATTGAACCAATTGTAGGGAAACTGGTGTGGTTTTTGGATAACCAGGCTGCTTCAAAGCTCAAGGGCTTTTCTCAATTTTCTAAGTAG 804 47.01 MALLELNKNRGEVRIHESLEELSTDLADYIAELSEASVKERGFFAIALSGGSIITLMRNLCGAPYNKTVDWSKWYIFWADERVVSKSHVDSNYKLAKDHLLSKLPIVPSHVHSINDSLTAEEAANEYEFVIRQLVRTRVVNVSDVSDCPKFDLILLGMGPDGHVASLVPDHPVLEEKNEWVTFITTCPKPPPERITFTLPVINSAANVAVVATGGEKAEAAWLAIDDVGPECPVLPARMIEPIVGKLVWFLDNQAASKLKGFSQFSK 267
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso5g02204 267 CDD 6PGL 20 251 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Smso5g02204 267 FunFam Probable 6-phosphogluconolactonase 8 260 - -
Smso5g02204 267 SUPERFAMILY NagB-RpiA-CoA transferase-like 13 260 IPR037171 -
Smso5g02204 267 NCBIfam 6-phosphogluconolactonase 15 259 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Smso5g02204 267 Gene3D - 8 262 - -
Smso5g02204 267 PANTHER 6-PHOSPHOGLUCONOLACTONASE 7 260 IPR039104 -
Smso5g02204 267 Coils Coil 19 39 - -
Smso5g02204 267 Pfam Glucosamine-6-phosphate isomerases-6-phosphogluconolactonase 19 249 IPR006148 GO:0005975(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso5g02204 K01057 6-phosphogluconolactonase [EC:3.1.1.31]
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Event-related genes

Select Gene_1 Gene_2 Event_name
153848 Smso4g00456 Smso5g02204
339971 Smso26g02834 Smso5g02204
430012 Smso21g00488 Smso5g02204
433045 Smso4g00456 Smso5g02204
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4995114 Smso Smso5g02204 Smso-Chr5:110006728 Smso8g03045 Smso-Chr8:96284316
5012041 Smso Smso17g01067 Smso-Chr17:12051799 Smso5g02204 Smso-Chr5:110006728
5082659 Smso Smso21g00488 Smso-Chr21:4977580 Smso5g02204 Smso-Chr5:110006728
5092805 Smso Smso26g02834 Smso-Chr26:63047449 Smso5g02204 Smso-Chr5:110006728
5098971 Smso Smso4g00456 Smso-Chr4:5995550 Smso5g02204 Smso-Chr5:110006728