AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso7g00029 ATGGGGACCAGACGTGACGGGACCGTCATGCCATGGGTCTGGGAAGCCAATCGAGGTAAACCAGTCCGCGAAAACGCCACCTTTTCATTAGGCTCAGATGGTAACCTCATCCTGGCGGAGGCAAACGGGCGGATTGTGTGGCAAACCAACACCGCCAATAAAGGTGTTGTCGGTTTCGCCATACTCTCCGATGGTAACGTCGTGCTTCGTGACTCAAAGGGTAATTTTGTCTGGCAAAGCTTTGATTCCCCCACCGATACTCTCCTGGTCGGCCAAACTCTCCGGGTGAGAGGAGGGCCGTACAAGCTCGTGAGCAGGGAGTCGGTGACTAACAACGTTGACGGGGTTTATAGCTTCGTAATCGAGCCTAAAAGACTGGCTTTGTATTACAAGAACAACATGCGTTACTGGTCATCCACGTTCCCTGAATTAAACCGAGAAAATGTGACTCTAGTTAATGCCACGTTACGAATTGCGGAAACTGAGTACGAAGAGAACAACTTTCACTCACTCACGTGTAATATTGAAAACGGTCAGTTTTTTGAGTTTCCTTCTATAGATATGGGCACAGTTCGGTACAATAGCTCGTTATCATATCTCCGATTGGGAATCGACGGCAACCTAAGACTCTACACTTACCGTGCGAATGTGCGGGGAAATGCATGGAGCTTGTTGTACACTTTGTTTGATAGGCGTGAGAACGAGAATGGGATGATTTTTGAAGATGAGTGTCAGTTACCAAATCGGTGCGGGAAGTTTGGGCTTTGA 768 48.31 MGTRRDGTVMPWVWEANRGKPVRENATFSLGSDGNLILAEANGRIVWQTNTANKGVVGFAILSDGNVVLRDSKGNFVWQSFDSPTDTLLVGQTLRVRGGPYKLVSRESVTNNVDGVYSFVIEPKRLALYYKNNMRYWSSTFPELNRENVTLVNATLRIAETEYEENNFHSLTCNIENGQFFEFPSIDMGTVRYNSSLSYLRLGIDGNLRLYTYRANVRGNAWSLLYTLFDRRENENGMIFEDECQLPNRCGKFGL 255
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso7g00029 255 CDD B-lectin 1 84 IPR001480 -
Smso7g00029 255 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 12 254 IPR051343 -
Smso7g00029 255 SUPERFAMILY alpha-D-mannose-specific plant lectins 8 140 IPR036426 -
Smso7g00029 255 FunFam Os04g0303100 protein 6 138 - -
Smso7g00029 255 Gene3D - 2 82 IPR036426 -
Smso7g00029 255 SMART blect-4 1 84 IPR001480 -
Smso7g00029 255 Pfam D-mannose binding lectin 13 96 IPR001480 -
Smso7g00029 255 ProSiteProfiles Bulb-type lectin domain profile. 1 82 IPR001480 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso7g00029 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr29:746741 Smso7g00029 Smso-Chr7:450839 dispersed
Smso Smso-Chr7:450839 Smso7g00054 Smso-Chr7:984166 dispersed
Smso Smso-Chr29:675869 Smso7g00029 Smso-Chr7:450839 wgd