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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso7g00067 ATGCTCCTGGAACATATCATAGAAATGCGAGTACATGTGGATTGCCCCGGATGTGAGAACAAGATCCGTAAAGCTCTTCAAAGACTCAAAGGGGTGGAAAACGTCGATATAGACATGGGATTACAAAAGGTGACAGTCACGGGAATCGCCGACCAGAAGAAGGTGCTGAAAACGGTGAGAAAGACCGGCCGCCGAGCCGAGATATGGAACATACCCTATAACCCTGATATTCGTACACATAACTACAACGTTAATCAATACGCTCAACAACAGCAACAACAAAATGGTGCTTCGGGTCAAGCCCCCTCGGCAACATTCTACACCCGACAGCCATCGTCTACATCATCGTACAACTACTACAAACACGGTTATGATGACCACTACTTTTATAATCCGGTCCAGTCCTCAGGTTTAATCGGACACCAGACTGGTGCTGCCTTTAGCGACGAAAATACCAATGCTGCTTGTAAAATTATGTAG 480 46.04 MLLEHIIEMRVHVDCPGCENKIRKALQRLKGVENVDIDMGLQKVTVTGIADQKKVLKTVRKTGRRAEIWNIPYNPDIRTHNYNVNQYAQQQQQQNGASGQAPSATFYTRQPSSTSSYNYYKHGYDDHYFYNPVQSSGLIGHQTGAAFSDENTNAACKIM 159
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso7g00067 159 SUPERFAMILY HMA, heavy metal-associated domain 6 70 IPR036163 GO:0046872(InterPro)
Smso7g00067 159 Gene3D - 3 68 - -
Smso7g00067 159 ProSiteProfiles Heavy-metal-associated domain profile. 4 67 IPR006121 GO:0046872(InterPro)
Smso7g00067 159 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 6 159 IPR045181 GO:0046872(InterPro)
Smso7g00067 159 CDD HMA 8 67 IPR006121 GO:0046872(InterPro)
Smso7g00067 159 Pfam Heavy-metal-associated domain 10 64 IPR006121 GO:0046872(InterPro)
Smso7g00067 159 MobiDBLite consensus disorder prediction 90 109 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso7g00067 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr12:92233373 Smso7g00067 Smso-Chr7:1352157 dispersed
Smso Smso-Chr19:659372 Smso7g00067 Smso-Chr7:1352157 dispersed
Smso Smso-Chr6:12832635 Smso7g00067 Smso-Chr7:1352157 dispersed
Smso Smso-Chr6:26108340 Smso7g00067 Smso-Chr7:1352157 dispersed
Smso Smso-Chr29:1485756 Smso7g00067 Smso-Chr7:1352157 wgd