AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso7g00069 ATGGGGAATAAGCTGGGGAGGAGACGACAGCTAGTTGACGAGAAGTATACACGGCCTCAAGGGCTGTATCAACACAAAGATGTAGATCACAAGAAGCTTCGTAAGTTGATTCTTGATTCTAAGCTCGCCCCTTGTTATCCCGGAGATGATGACTGCAGTTGTGATCTGGAAGAATGCCCAATTTGCTTCTTGTATTATCCAAGTCTAAATAGATCAAGATGTTGCACTAAAGGCATTTGTACTGAGTGTTTCTTGCAGATGAAGACGCCTAATTCTACGCGCCCTACACAATGTCCCTTTTGTAAAACTTTAAACTATGCGGTGGAGTATAGAGGCGTGAAAACTAAAGAGGAAAAGGGACAGGAGCAAATTGAAGAACAAAGAGTGATAGAAGCAAAAATAAGAATGAGGCAACAAGAAATTCAAGATGAAGAGGAAAGAATGCTAAAAAGGCAAGAGACGCGTTCTTCAAGCAGGGTGTTTGAACCAAGTGAGGCTGAATATTTCTCCACAGCAGCAGCATCTTCTTCTGAAGGTGAGGAAATAGTTTCTGTTCCAAGTCCTGCGGCAATTAGACATCCTCCACGCTATAGAGAGAACAGAGATGATGAGTTTGATCTTGATCCTGAAAACTTAATGCTCATGGAAGCCATCTGGTTGTCTTTTCAGGAGGATAACAAGCACAAAAACGATAACCCTAATTACTGTGATGCCACCCAATTAGCAAAATACGCAACAGAAGTTCGTCTTTTAGCATCCGTGGCTCCACAAGCAGGGTATTCAGCTTCATCCTCATCACCTTCTAGTGGACTTGCATGCGCGATAGCCGCCCTCGCTGAAATCCAGCAAACGGGAGGTGAATCGTCAACTAATTACAACAATTATGGTGGGAATGTATCAACATACAACGTGCATCCCAATCATAGCCAAACTGGGTTATTATCTCTTGATAACCATCTGCAAATTGATCATGATAGTTCAGAAGAATTGGGTGAAACTGGGTTTGGGTATGATGGTAATTTGAGGACAGTAGATGATAATGATGATGTAAGCAGAGAGCAGTATGGTCAACTTGATGAGGTGGAAACTGGTGGTTATGGTGGTGGTGGGAATATGGTTCCTGAGAGCTTTGAAGAGCAGATGATGCTAGCCATGGCGGTTTCACTGGCTGAGGCCCGAGCCAGGACGAGTAGTACACCTGAGGTTGCGTGGATTTAG 1218 43.68 MGNKLGRRRQLVDEKYTRPQGLYQHKDVDHKKLRKLILDSKLAPCYPGDDDCSCDLEECPICFLYYPSLNRSRCCTKGICTECFLQMKTPNSTRPTQCPFCKTLNYAVEYRGVKTKEEKGQEQIEEQRVIEAKIRMRQQEIQDEEERMLKRQETRSSSRVFEPSEAEYFSTAAASSSEGEEIVSVPSPAAIRHPPRYRENRDDEFDLDPENLMLMEAIWLSFQEDNKHKNDNPNYCDATQLAKYATEVRLLASVAPQAGYSASSSSPSSGLACAIAALAEIQQTGGESSTNYNNYGGNVSTYNVHPNHSQTGLLSLDNHLQIDHDSSEELGETGFGYDGNLRTVDDNDDVSREQYGQLDEVETGGYGGGGNMVPESFEEQMMLAMAVSLAEARARTSSTPEVAWI 405
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso7g00069 405 ProSiteProfiles Zinc finger RING-type profile. 59 102 IPR001841 -
Smso7g00069 405 PANTHER PROTEIN SIP5 1 303 IPR039301 GO:0005737(PANTHER)
Smso7g00069 405 MobiDBLite consensus disorder prediction 328 349 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso7g00069 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
424936 Smso13g00189 Smso7g00069
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr5:15090394 Smso7g00069 Smso-Chr7:1366543 dispersed
Smso Smso-Chr13:13554515 Smso7g00069 Smso-Chr7:1366543 wgd
Smso Smso-Chr29:1487955 Smso7g00069 Smso-Chr7:1366543 wgd