Gene detail

AGRP Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Smso7g00075	ATGGCTGCTTCTTCTTCTATTTCAACTCCTACATGGAGTAATCCCAAAACCAGTTTTCGTGTTCTTCATTCGAATTCATCGATTAAACCGACGAATTATCGAATTGGGAAAAATTCGATCGTTTCGGCGCTTCAAACGCCTTCGATTATCCAAATTCCGAAGCAGAATCCAGTTAAAACCTCAACCGGAGCAATTGAATCACCTCCGTCTTCGTCTTCATCCGTCCAACAAAATTGGAACGCGTTGCAAAAACTCGCGGCAATGGCATTGGACGCGATCGAAGACGAGTTAAAAGCCAGAGAGAAGCTACACCCGTTGCCCAAAACCGCGGACCCGAACGTCCAAATCGCCGGAAATTTCTCTCCGGTCCCGGAGCAACCCGTGCGACATGGGTTACCGGTGACCGGAAAAATCCCGGACCACATCCAAGGAGTTTATTTGCGAAATGGAGCGAACCCGTTATTCGAACCAACCTCCGGCCACCATCTGTTCGATGGGGACGGGATGATATATGCGGTCAGGTTCGAAAACGGGTTAGCAAGTTACGCATGCCGGTTCACCGAAACGCAAAGACTAGTACAAGAGCGTGCAATCGGAAAGCCCGTGTTCCCTAAAGCAATTGGGGAACTCCACGGGCATTCCGGAATAGCAAAATTGCTATTATTTTACGCCCGAGGGATGTGCGGGCTTATTGACCACACCAAAGGTATTGGTGTGGCCAACGCGGGATTGGTGTATTTCAACAACAGGTTGTTAGCTATGTCAGAGGACGATCTACCTTATCACGTGCGAATCACGTGTTCCGGTGATTTAAAAACCGCCGGAAGGTACGATTTCGACGGGCAGTTGGAGTCTACGATGATTGCACACCCGAAACTTGATCCGGTTACCGGCGAGTTATTCGGGTTGAGCTACGACGTTGTTAAAAAACCGTACCTGAAATACTTCCGGTTTTCGCCGGACGGGAAGAAGTCGCAGGATGTCGCGATCGATTTGGGGATACCGACTATGGTTCATGACTTTGCGATTACGGAGAATTTCGTGGTGGTGCCGGATCATCAGGTGGTGTTTAAGATGTCGGAGATGATCACCGGTGGGTCGCCGGTGGTGTATGATAAAAATAAGGTGTCACGTTTTGGGGTTTTGAACAAATATGCGGAAAACGGGTCGGGTATAAAATGGGTCGAGGTGCCGGATTGTTTTTGTTTTCATTTATGGAACGCGTGGGAAGAACCCGGATCCGACGAGGTGGTGGTAATCGGGTCGTGCATGACTCCAGCTGACTCTATTTTTAATGAATGTAATGAGGAGTTAAAAAGTGTTTTGTCGGAAATACGTCTTAATTTAAAGACCGGAAAGTCCACGCGCCGGCAGATACTTTCGCCGGAAAATGACGTCAATTTGGAAGCCGGGATGGTGAACAAAAACCTGCTCGGCCGGAAATCAAAATTCGCGTACCTGGCAATCGCCGAGCCGTGGCCGAAGGTCTCCGGGTTCGCTAAAGTCGATCTCTCCACCGGCGAGACTAAAAAGTTTATCTACGGCGACGAAAAGTACGGCGGGGAGCCTCTGTTTCTCCCCCGAGATGGCAGTTCCGGCGTGGAAGACGACGGGCATATCCTGGCGTTCGTTCACGACGAAAAGGTATGGAAATCGGAGCTTCAAATTGTGAATGCAATGACGATGGAGTTAGAGGCGACGGTGAAGCTGCCGTCGAGGGTTCCGTATGGGTTTCATGGAACGTTCATAAACGCCAAAGATTTGGCAACTCAGGCGTGA	1779	49.63	MAASSSISTPTWSNPKTSFRVLHSNSSIKPTNYRIGKNSIVSALQTPSIIQIPKQNPVKTSTGAIESPPSSSSSVQQNWNALQKLAAMALDAIEDELKAREKLHPLPKTADPNVQIAGNFSPVPEQPVRHGLPVTGKIPDHIQGVYLRNGANPLFEPTSGHHLFDGDGMIYAVRFENGLASYACRFTETQRLVQERAIGKPVFPKAIGELHGHSGIAKLLLFYARGMCGLIDHTKGIGVANAGLVYFNNRLLAMSEDDLPYHVRITCSGDLKTAGRYDFDGQLESTMIAHPKLDPVTGELFGLSYDVVKKPYLKYFRFSPDGKKSQDVAIDLGIPTMVHDFAITENFVVVPDHQVVFKMSEMITGGSPVVYDKNKVSRFGVLNKYAENGSGIKWVEVPDCFCFHLWNAWEEPGSDEVVVIGSCMTPADSIFNECNEELKSVLSEIRLNLKTGKSTRRQILSPENDVNLEAGMVNKNLLGRKSKFAYLAIAEPWPKVSGFAKVDLSTGETKKFIYGDEKYGGEPLFLPRDGSSGVEDDGHILAFVHDEKVWKSELQIVNAMTMELEATVKLPSRVPYGFHGTFINAKDLATQA	592

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Smso7g00075	592	PANTHER	BETA-CAROTENE DIOXYGENASE	104	584	IPR004294	GO:0009570(PANTHER)\|GO:0010436(PANTHER)\|GO:0016121(PANTHER)\|GO:0016702(InterPro)
	Smso7g00075	592	Pfam	Retinal pigment epithelial membrane protein	123	583	IPR004294	GO:0016702(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Smso7g00075	K09840	9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51]

Event-related genes

Select	Gene_1	Gene_2	Event_name
	143018	Smso10g03382	Smso7g00075
	147074	Smso16g01589	Smso7g00075
	154166	Smso7g00075	Smso9g00683
	424934	Smso13g00180	Smso7g00075
	431844	Smso26g01838	Smso7g00075

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Smso	Smso-Chr10:89039685	Smso7g00075	Smso-Chr7:1565344	dispersed
	Smso	Smso-Chr16:77283063	Smso7g00075	Smso-Chr7:1565344	dispersed
	Smso	Smso-Chr23:514437	Smso7g00075	Smso-Chr7:1565344	dispersed
	Smso	Smso-Chr2:673670	Smso7g00075	Smso-Chr7:1565344	dispersed
	Smso	Smso-Chr13:12138897	Smso7g00075	Smso-Chr7:1565344	wgd
	Smso	Smso-Chr26:34787698	Smso7g00075	Smso-Chr7:1565344	wgd
	Smso	Smso-Chr29:1669178	Smso7g00075	Smso-Chr7:1565344	wgd
	Smso	Smso-Chr7:1565344	Smso9g00683	Smso-Chr9:15882559	wgd