AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Smso7g00086 | ATGCTTCGAGTTTTAAACAAGTCATCTTTCAACTTCGTCGTCGGCCGTCGACGGCTAAGCACCACCGCTACCACCGTAATGAGTTTCGGAGACGGCAGCCACGGTGCGCTTGGGTTATCTACCTCCGTCACCAGAATCGGTTCCGACGCATACGAACCAACTCCAATCCCAACCCTACCCCCGGACGTTTCCAGCATCGCCGCCGGTCACTACCACTCTCTCGCCGTCACATCTCAGGGCCACCTCTGGTCCTGGGGCCGGAATGCTGAATACCAACTTGGACGTGCCCTAGATTCCCCTAGAGAAACATGGGTGGAGTCGCAAAGAATAAATGGGTTGAGTGGTGTGAGATCGGCATTTGCATCAGGTGTTGTATCTGCTGCCATTAGAGGTGATGGGTCTTTATGGATTTGGGGGAAATCAAAGCGTGGGCAATTAGGGCTTGGAAATGGGATCATTGAGGCTGTTCTTCCCTCCAGGATTAAAGTTCTTGATAAAGAAGAGATAATTAAGGTCTCATTTGGATGGGGGCATGCTGTTGCACTTACCAAAGATGGAAAGTTGTTTGGTTGGGGTTATTCAGCAGATGGTAGATTAGGAAAGAGAAGAATTATGGGGGCTTCACATCTTGATTCAAAAGCTAATTTGTCTTCAAGTTTGAAGCTTGAAGATGCTGAGAAAGTGGTCTTGGAAGCCATGGATAAGGAGAACGATATGCCCATAATCTGGGAGCCCTGTTTAATTGATGAACTCAAAGGTGCCGAAGTTGCTGATGTGTCATGTGGGCTCGATCACACCTTGGTCCTGCTACGTGATGGAACCTTACTCAGTGGTGGAAGCAATGCATATGGTCAATTGGGTAGATCAACACAAGATATGGAGTTTCTTCCAGTTGACATAAGTGTCTACCCTGTCTCAATTGCGACCGGGCTGGGCCATTCTTTAGCAATATGCCAAATCCCATCAGCAGATGGAGGCGGTGGCATTTCAGGCATCTTTTCATGGGGTTGGGGTCAGAATTCTCAGCTCGGGAGGGTGGGTCCCACGAACATCCCATTGCCCGTGGATGGACTTTTAGGGGAAAACCCGTTGTCAGTTTCAGGTGGGCGCGTGCATACCATTGCCGTCATGACCAATGGAGATCTTTTCTCATGGGGGTGTGGTAGAAACGGGCGGCTAGGGTTAGGTAGTTCTGCAGATGAGCCTGAACCCATGTTGGTTGAGTTTGCAGAAGGTGCTAATGTTTTGCAAGCTGTCTCAGGGTTTGATCATACTCTGGTCCTAACCGGCAACTAA | 1296 | 49.38 | MLRVLNKSSFNFVVGRRRLSTTATTVMSFGDGSHGALGLSTSVTRIGSDAYEPTPIPTLPPDVSSIAAGHYHSLAVTSQGHLWSWGRNAEYQLGRALDSPRETWVESQRINGLSGVRSAFASGVVSAAIRGDGSLWIWGKSKRGQLGLGNGIIEAVLPSRIKVLDKEEIIKVSFGWGHAVALTKDGKLFGWGYSADGRLGKRRIMGASHLDSKANLSSSLKLEDAEKVVLEAMDKENDMPIIWEPCLIDELKGAEVADVSCGLDHTLVLLRDGTLLSGGSNAYGQLGRSTQDMEFLPVDISVYPVSIATGLGHSLAICQIPSADGGGGISGIFSWGWGQNSQLGRVGPTNIPLPVDGLLGENPLSVSGGRVHTIAVMTNGDLFSWGCGRNGRLGLGSSADEPEPMLVEFAEGANVLQAVSGFDHTLVLTGN | 431 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Smso7g00086 | 431 | Gene3D | - | 7 | 226 | IPR009091 | - | |
| Smso7g00086 | 431 | Gene3D | - | 227 | 431 | IPR009091 | - | |
| Smso7g00086 | 431 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 186 | 272 | IPR000408 | - | |
| Smso7g00086 | 431 | PRINTS | Chromosome condensation regulator RCC1 signature | 63 | 76 | IPR000408 | - | |
| Smso7g00086 | 431 | PRINTS | Chromosome condensation regulator RCC1 signature | 133 | 149 | IPR000408 | - | |
| Smso7g00086 | 431 | PRINTS | Chromosome condensation regulator RCC1 signature | 82 | 98 | IPR000408 | - | |
| Smso7g00086 | 431 | PRINTS | Chromosome condensation regulator RCC1 signature | 375 | 396 | IPR000408 | - | |
| Smso7g00086 | 431 | PRINTS | Chromosome condensation regulator RCC1 signature | 172 | 188 | IPR000408 | - | |
| Smso7g00086 | 431 | PRINTS | Chromosome condensation regulator RCC1 signature | 188 | 202 | IPR000408 | - | |
| Smso7g00086 | 431 | PRINTS | Chromosome condensation regulator RCC1 signature | 25 | 41 | IPR000408 | - | |
| Smso7g00086 | 431 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 332 | 376 | IPR000408 | - | |
| Smso7g00086 | 431 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 379 | 428 | IPR000408 | - | |
| Smso7g00086 | 431 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 132 | 182 | IPR000408 | - | |
| Smso7g00086 | 431 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 24 | 79 | IPR000408 | - | |
| Smso7g00086 | 431 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 256 | 285 | - | - | |
| Smso7g00086 | 431 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 63 | 92 | - | - | |
| Smso7g00086 | 431 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 273 | 320 | IPR000408 | - | |
| Smso7g00086 | 431 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 23 | 429 | IPR051210 | - | |
| Smso7g00086 | 431 | SUPERFAMILY | RCC1-BLIP-II | 23 | 429 | IPR009091 | - | |
| Smso7g00086 | 431 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 380 | 431 | IPR000408 | - | |
| Smso7g00086 | 431 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 259 | 269 | IPR000408 | - | |
| Smso7g00086 | 431 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 330 | 379 | IPR000408 | - | |
| Smso7g00086 | 431 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 133 | 185 | IPR000408 | - | |
| Smso7g00086 | 431 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 66 | 76 | IPR000408 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Smso7g00086 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Smso | Smso-Chr3:111948635 | Smso7g00086 | Smso-Chr7:1724196 | dispersed | |
| Smso | Smso-Chr29:1809268 | Smso7g00086 | Smso-Chr7:1724196 | wgd |