Gene detail

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Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Smso7g00107	ATGGAGGCTTTGATGCATATCGGATTTAGGGTTTATTCCGATTCCATAAACCCTAGTTCTCGATTCAGATCCTGGAAGTCGCCATCGATCCTAATGGAAGGCCGCAGAACCAATCTTACTTGTATTCGAGCTCAACAGAACGGGGCTTTAACTGCAACCAGTGATTCACTAGTTGAAGAACTGAAATGTAAAGAGTGGGAGATTGGAGTTCTAAAGGAGGAAATAGCTGCAACTCAGGGCATTCGGATAAGAAGGCAACCCCCGACTGGACCTCCTTTGCATTATGTTGGTCCTTTTGAGTTTCGGTTGCAGAATGAAGGGAATACTCCTCGTAATATACTCGAGGAAATTGTATGGAACAAAGATACAGAGGTTACTCAGATGAAAGAGCAATTTCCAATATCTTCACTAAAAAAGGCTCTTGAAAACGCTCCTCCTCCAAGAGACTTTCTTGGAGCTCTTAAGGCATCATATTTACGAACAGGATTGCCTGCTTTAATCGCTGAAGTGAAAAAGGCTTCACCAAGTAGAGGTGTTCTAAGGGAAGATTTTCATCCTGTTGAAGTTGCACAAGCTTATGAGAAAGGTGGAGCAGCATGCCTTAGTGTTTTGACTGATGCAAAATATTTTCAGGGAAGCTTTGAGAATCTAGAGGCTATACGTAATGCTGGAGTCAAGTGCCCTCTTTTGTGCAAAGAGTTCGTTGTGGATGCATGGCAGCTGTATTATGCAAGAACAAAGGGCGCAGATGGTGTTTTGTTAATTGCAGCTGTTTTATCAGATCTTGACATAAAATATATGCTCAAGATTTGCAAAATGATTGGACTGACTGCAATCGTTGAGGTACACGATGAGAATGAAATGGACCGGATGCTGGCAATTGATGGAATTGAACTCCTTGGCATCAATAATCGTAACCTTGAAACATTTGAAGTCGATATCAGCAACACAAAGAAGTTGCTCGAGGGAAAACGTGGTGAAACAATCAGACAGAAAGACATATTAGTGGTCGGGGAGTCTGGACTGTTCACTCCGGCTGACATTGCCTATGTACAAGAAGCTGGTGTGAAAGCCATACTGGTCGGGGAGTCGATTGTGAAGCAGAAAGATCCAACAAAAGGAATTAGAGATCTTTTTGGTAAAGATATATTGGGTTAG	1158	42.31	MEALMHIGFRVYSDSINPSSRFRSWKSPSILMEGRRTNLTCIRAQQNGALTATSDSLVEELKCKEWEIGVLKEEIAATQGIRIRRQPPTGPPLHYVGPFEFRLQNEGNTPRNILEEIVWNKDTEVTQMKEQFPISSLKKALENAPPPRDFLGALKASYLRTGLPALIAEVKKASPSRGVLREDFHPVEVAQAYEKGGAACLSVLTDAKYFQGSFENLEAIRNAGVKCPLLCKEFVVDAWQLYYARTKGADGVLLIAAVLSDLDIKYMLKICKMIGLTAIVEVHDENEMDRMLAIDGIELLGINNRNLETFEVDISNTKKLLEGKRGETIRQKDILVVGESGLFTPADIAYVQEAGVKAILVGESIVKQKDPTKGIRDLFGKDILG	385

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Smso7g00107	385	SUPERFAMILY	Ribulose-phoshate binding barrel	121	380	IPR011060	-
	Smso7g00107	385	CDD	IGPS	150	378	IPR013798	GO:0004425(InterPro)
	Smso7g00107	385	Gene3D	Aldolase class I	106	383	IPR013785	-
	Smso7g00107	385	ProSitePatterns	Indole-3-glycerol phosphate synthase signature.	166	184	IPR001468	GO:0004425(InterPro)\|GO:0006568(InterPro)
	Smso7g00107	385	FunFam	Indole-3-glycerol phosphate synthase chloroplastic	106	384	-	-
	Smso7g00107	385	Hamap	Indole-3-glycerol phosphate synthase [trpC].	112	380	IPR013798	GO:0004425(InterPro)
	Smso7g00107	385	Pfam	Indole-3-glycerol phosphate synthase	114	378	IPR013798	GO:0004425(InterPro)
	Smso7g00107	385	PANTHER	TRYPTOPHAN BIOSYNTHESIS PROTEIN	54	381	IPR045186	GO:0000162(PANTHER)\|GO:0004425(InterPro)\|GO:0004425(PANTHER)\|GO:0004640(PANTHER)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Smso7g00107	K01609	indole-3-glycerol phosphate synthase [EC:4.1.1.48]

Event-related genes

Select	Gene_1	Gene_2	Event_name
	143011	Smso10g03366	Smso7g00107
	147082	Smso16g01616	Smso7g00107

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Smso	Smso-Chr11:70932745	Smso7g00107	Smso-Chr7:1920689	dispersed
	Smso	Smso-Chr10:88823996	Smso7g00107	Smso-Chr7:1920689	wgd
	Smso	Smso-Chr16:77933066	Smso7g00107	Smso-Chr7:1920689	wgd
	Smso	Smso-Chr29:2275778	Smso7g00107	Smso-Chr7:1920689	wgd