Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Smso7g00117 | ATGTCTAGAAGTTATATTGATAGAGCCATGGCTTCTTACAAGAAACCACGCATTAGAGACGGTGCGGTTCGTAGGTTTCTTTTTGTGTTGTGTTTAACTCTGGCTGGGGTTCTTTTGTTATTGTTTCTTGTTGGGATGAATTCAAACAATGAGATTGAGACTAGTAGTGAGTTTAGCTCTAACATTGGTTTGATCAAGAGTATCAAGCTCCCTAAACATAATCACTTGTCGAAAATGTTGGAGGATAGAAACCAGTTGCCTCCAAGAAACATGGATTTGTATCCGATTCTAGCTAAGGACCGTATAGTAATCGTTCTTTATGTTCACAATCGTCCCAAGTATCTCAAACTAGTGGTGGATAGCCTTTCTCGCGTGTCGGGTATTAATGAAACGTTGTTAATTGTAAGTCATGATGGATACTTTGAAGAAATGAACAAGATTGTTGAGGGAATAAGGTTTTGTCAAGTGAAACAAGTGTTCGCCCCCTTTTCGCCTCATATATTTCCCAATAGTTTTCCTGGTGTATCCCCTGATGACTGCAAAGAGAAAGATAACCTGATTGAGAAAAAGTGTGAAGGGAGTACCGATCAATATGGAAATCATCGGTCACCAAAGATCGTGTCTTTAAAACATCATTGGTGGTGGATGATGAACACGGTTTGGGACGGGTTAAAAGAGACAACGGGTCATTCGGGTGATATCCTTTTTATAGAAGAAGATCATTTCATTTTCCCAAACGCGTATCAGAATTTGAAGATTTTAACAGAATTAAAACCCACAAAATGTCCCGATTGTTATGCTGCAAATCTTGCTCCGAGTAATGTCAAATCCAGAGGTGAAAATTGGGATAGTTTGATAGCAGAAAGAATGGGTAACGTGGGCTACACATTCAATCGAACGGTATGGAGGAAAATACATAAAAAAGCTACAGAATTTTGCTTCTTTGATGACTATAACTGGGATATAACAATGTGGGTGACCGTTTATCCTTCATTTGGTGGTGCGGTTTACTCTATGCGTGGACCTAGGGCTAGCGCGGTTCACTTTGGGAAATGTGGGTTGCACCAGGGTCAAGGGGAAAACACTGCTTGTGTGGACAACGGTGTGGTGAACATCGACACCGAGGAGATTGACAAGGTTGTTAATATCAAACCCGAGTGGGGCGTGCATGTGATAAGCAATCAAGCCGGGTATCAAGCCGGATTTAGAGGGTGGGGTGGGTGGGGAGATAAAAGAGATCATCAATTATGTTTGGATTTTGCTCAAATGTACCACGTGAGGAGTAAAACGTCTTGA | 1296 | 41.28 | MSRSYIDRAMASYKKPRIRDGAVRRFLFVLCLTLAGVLLLLFLVGMNSNNEIETSSEFSSNIGLIKSIKLPKHNHLSKMLEDRNQLPPRNMDLYPILAKDRIVIVLYVHNRPKYLKLVVDSLSRVSGINETLLIVSHDGYFEEMNKIVEGIRFCQVKQVFAPFSPHIFPNSFPGVSPDDCKEKDNLIEKKCEGSTDQYGNHRSPKIVSLKHHWWWMMNTVWDGLKETTGHSGDILFIEEDHFIFPNAYQNLKILTELKPTKCPDCYAANLAPSNVKSRGENWDSLIAERMGNVGYTFNRTVWRKIHKKATEFCFFDDYNWDITMWVTVYPSFGGAVYSMRGPRASAVHFGKCGLHQGQGENTACVDNGVVNIDTEEIDKVVNIKPEWGVHVISNQAGYQAGFRGWGGWGDKRDHQLCLDFAQMYHVRSKTS | 431 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Smso7g00117 | 431 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 101 | 361 | IPR029044 | - | |
| Smso7g00117 | 431 | Pfam | N-acetylglucosaminyltransferase II (MGAT2) | 88 | 417 | IPR007754 | GO:0005795(InterPro)|GO:0008455(InterPro)|GO:0009312(InterPro)|GO:0016020(InterPro) | |
| Smso7g00117 | 431 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 100 | 425 | IPR029044 | - | |
| Smso7g00117 | 431 | PANTHER | BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II | 23 | 426 | IPR007754 | GO:0000139(PANTHER)|GO:0005795(InterPro)|GO:0006487(PANTHER)|GO:0008455(PANTHER)|GO:0008455(InterPro)|GO:0009312(InterPro)|GO:0016020(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Smso7g00117 | K00736 | alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase [EC:2.4.1.143] |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 424924 | Smso13g00149 | Smso7g00117 | |
| 431858 | Smso26g01880 | Smso7g00117 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Smso | Smso-Chr13:8371795 | Smso7g00117 | Smso-Chr7:1986345 | wgd | |
| Smso | Smso-Chr26:36415950 | Smso7g00117 | Smso-Chr7:1986345 | wgd | |
| Smso | Smso-Chr29:2331057 | Smso7g00117 | Smso-Chr7:1986345 | wgd |