AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Smso7g00133 | ATGATCGGTCCCAGGTGCATTTGTCCACAAACAACTCAACATTCTTCATTACCTTTTAATGAATTGATGTCGTTAGCCGTCGAACCTGTTCCTAGTCAAGAAACCAAGAATGGATTCGAAGAAAACGTGGAAGAAAAACAAAGTATGAAGAGAATCGGGAGCGAATCATCCGTTTATGAAACTGAAGATGAAGGTGATGATGCAGACCATAACAAAATCGAACTGGGTCCTCAGTGCACCCTCAAAGAACAGCTTGAGAAAGACAAGGATGATGAGAGCCTCAGAAAGTGGAAAGAACAGCTACTTGGAAACGTTGATTTTAATGATGTCGGAGAATCACTGGAACCAGAAGTGAAAATTATCAGCCTTTCGATCTTGTCTCCGGGGAGATCTGACATTGTTCTTGCAATACCCGAAGATGGAAAACCTAAAGGCTTATGGTTTACACTGAAAGAAGGTTGTCGTTACAGTCTGAGGTTCGAGTTTCATGTCAGCCGTAACATTGTTTCAGGTTTAAAGTACACCAACAACGTTTGGAGAACTGGTTTCAAAGTGGATAGAGTGAAACAAATGCTTGGAACTTTTAGCCCCCAACAAGAAGCATACACTTATGAAATGCCTGAAGAGACTACCCCTTCTGGTTACTTTGCAAGAGGATCTTACTCTGCTAAAACAAAGTTTGTTGATGATGACAACAAATGCTACTTGGAGAACAACTATACGTTTGATATCCGGAAAGATTGGGCCAACACTGAATAA | 759 | 40.97 | MIGPRCICPQTTQHSSLPFNELMSLAVEPVPSQETKNGFEENVEEKQSMKRIGSESSVYETEDEGDDADHNKIELGPQCTLKEQLEKDKDDESLRKWKEQLLGNVDFNDVGESLEPEVKIISLSILSPGRSDIVLAIPEDGKPKGLWFTLKEGCRYSLRFEFHVSRNIVSGLKYTNNVWRTGFKVDRVKQMLGTFSPQQEAYTYEMPEETTPSGYFARGSYSAKTKFVDDDNKCYLENNYTFDIRKDWANTE | 252 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Smso7g00133 | 252 | Gene3D | Coagulation Factor XIII, subunit A, domain 1 | 70 | 250 | IPR024792 | - | |
| Smso7g00133 | 252 | MobiDBLite | consensus disorder prediction | 31 | 77 | - | - | |
| Smso7g00133 | 252 | FunFam | Rho GDP-dissociation inhibitor 1 | 71 | 250 | - | - | |
| Smso7g00133 | 252 | Pfam | RHO protein GDP dissociation inhibitor | 61 | 247 | IPR000406 | GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro) | |
| Smso7g00133 | 252 | PRINTS | RHO protein GDP dissociation inhibitor signature | 201 | 213 | IPR000406 | GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro) | |
| Smso7g00133 | 252 | PRINTS | RHO protein GDP dissociation inhibitor signature | 185 | 200 | IPR000406 | GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro) | |
| Smso7g00133 | 252 | PRINTS | RHO protein GDP dissociation inhibitor signature | 168 | 184 | IPR000406 | GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro) | |
| Smso7g00133 | 252 | PRINTS | RHO protein GDP dissociation inhibitor signature | 227 | 244 | IPR000406 | GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro) | |
| Smso7g00133 | 252 | SUPERFAMILY | E set domains | 56 | 249 | IPR014756 | - | |
| Smso7g00133 | 252 | PANTHER | RHO GDP-DISSOCIATION INHIBITOR | 53 | 248 | IPR000406 | GO:0005094(PANTHER)|GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0007266(PANTHER)|GO:0007266(InterPro)|GO:0016020(PANTHER) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Smso7g00133 | K12462 | Rho GDP-dissociation inhibitor |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 148144 | Smso18g01520 | Smso7g00133 | |
| 154170 | Smso7g00133 | Smso9g00720 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Smso | Smso-Chr21:24702423 | Smso7g00133 | Smso-Chr7:2297720 | dispersed | |
| Smso | Smso-Chr4:31080325 | Smso7g00133 | Smso-Chr7:2297720 | dispersed | |
| Smso | Smso-Chr7:2297720 | Smso9g00544 | Smso-Chr9:12789000 | dispersed | |
| Smso | Smso-Chr18:73066910 | Smso7g00133 | Smso-Chr7:2297720 | wgd | |
| Smso | Smso-Chr18:75982237 | Smso7g00133 | Smso-Chr7:2297720 | wgd | |
| Smso | Smso-Chr29:2631221 | Smso7g00133 | Smso-Chr7:2297720 | wgd | |
| Smso | Smso-Chr7:2297720 | Smso9g00720 | Smso-Chr9:16738958 | wgd |