AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso7g00142 ATGTCACCAATAATCATATACCCAATTCTCATACTCTCCCTTCTCATCCATCCACCCCCAATCGCCGGCGATCATTCATTCATCTCGGTGCTCATAACCCAAACCGGCCTCGATTTCGTCAAGAATTTGCTCGTGACGAAAGCAATTTCTACGATCACTCCCTCCCCAATTTCCAAAATTGATAGGGTTGTTAACATCCCTGTGATTGGTAAAGTGCATACTGTTCTTTCTGACGTCACTATTTACCGGTTCAGTGTCGGGTTATCGCAAGTTATACCCGGTCCCGCCGGAGTTTCTATTGCCGGGTCGGATGTTACCTGCGGGTTGAGGATGAAATGGCATTATTCTTATGGGTCTTCGCTTGTTCCGATTTCGATTTCAGATAGTGGGACTGCTGCTATTGAGGTTAATAGCATGGAGATGGGGGTGACATTGGGCTTTAATATTCAAGAGGGATCTATGAAACTTTCCACCATTGAATGTATTTGTCATATACATGATATTTCCATAGACCTAGATGGAGGTGCATCTTGGCTCTATCAAGGGATTCTGGATGCTTTCAAAGATGAAATAGTGTCAGCAGTAGAAAAAACAATCACTAAAATACTAAAAATAGAAATTGCAAAGCTTGAATCTCTTCTACAAAGTCTTCCAAAACAAATTGCAGCGGATGATGTGGCATCATTAAATGTTACATTTGTTAACAACCCTTTTTTAAGTGACAGGTCAATAGGGTTTGAGATAAACGGGTTGTTCATAGAAAATAGAACCGACACACATTCATATGGAAACAGTTTGCAGCCACCCGTCCATTGTTCAGATCCTTCAAAAATGATTGGAATTGCCCTAGATGAAGCTGTTTTCAAATCTGCATTTGCCTTATACTACAATGCCATGTTTATGCATTGGATTGTGGATAAGATTCCTGATCAATCCCTTTTGAACACAGCAGGGTGGAGATTTATTGTTCCTCAACTCTACAAAAAATACCCAAATGATAATATGAACTTAAATCTCTCTCTATCTTATCCACCAGTTGTGCAGATATCATTGCAGAATATTGATGCTACTATTTACGCAGATTTGGTTATAGATGTTCTTGATGGGAATGACGTAATACCCGTTGCTTGTCTCTCATTGGTAATTTCTGGCACAGGTTCAGTTCAAATTACCGGAAATAACCTTGCATCTCATTTGAAAATGGATGATTTTACCATGTCATTGAAATGGAGCAAGATTGGCACCTTGCACATGTTTCTAATTCAGCCTATGATGTGGACACTGATTGAAACTGTTTTCTTGCCATATGTGAATGCGCGAATTGGGATTGGGTTCCCTTTGCCTATAATTAGCGGGTTTACGCTTCAAAATGCTGAGATAATAACCTCGGATTCTAGAATCACTGTCTGCAGCGATGTTACATATTATGAATCGTTCGATAGTACCCAAGTCTACACTTCATAG 1464 39.96 MSPIIIYPILILSLLIHPPPIAGDHSFISVLITQTGLDFVKNLLVTKAISTITPSPISKIDRVVNIPVIGKVHTVLSDVTIYRFSVGLSQVIPGPAGVSIAGSDVTCGLRMKWHYSYGSSLVPISISDSGTAAIEVNSMEMGVTLGFNIQEGSMKLSTIECICHIHDISIDLDGGASWLYQGILDAFKDEIVSAVEKTITKILKIEIAKLESLLQSLPKQIAADDVASLNVTFVNNPFLSDRSIGFEINGLFIENRTDTHSYGNSLQPPVHCSDPSKMIGIALDEAVFKSAFALYYNAMFMHWIVDKIPDQSLLNTAGWRFIVPQLYKKYPNDNMNLNLSLSYPPVVQISLQNIDATIYADLVIDVLDGNDVIPVACLSLVISGTGSVQITGNNLASHLKMDDFTMSLKWSKIGTLHMFLIQPMMWTLIETVFLPYVNARIGIGFPLPIISGFTLQNAEIITSDSRITVCSDVTYYESFDSTQVYTS 487
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso7g00142 487 Gene3D - 35 215 - -
Smso7g00142 487 Gene3D - 29 462 - -
Smso7g00142 487 PIRSF Lipid-binding-protein 6 481 IPR030675 GO:0005615(InterPro)|GO:0008289(InterPro)
Smso7g00142 487 SMART bpi2-2 273 471 IPR001124 GO:0008289(InterPro)
Smso7g00142 487 PANTHER OS06G0309200 PROTEIN 12 482 IPR045897 -
Smso7g00142 487 CDD BPI2 278 473 - -
Smso7g00142 487 Pfam LBP - BPI - CETP family, C-terminal domain 259 475 IPR001124 GO:0008289(InterPro)
Smso7g00142 487 Pfam LBP - BPI - CETP family, N-terminal domain 36 213 IPR017942 GO:0008289(InterPro)
Smso7g00142 487 SMART bpi1-3 32 257 IPR017942 GO:0008289(InterPro)
Smso7g00142 487 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 244 475 IPR017943 GO:0008289(InterPro)
Smso7g00142 487 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 29 240 IPR017943 GO:0008289(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso7g00142 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr23:66340127 Smso7g00142 Smso-Chr7:2531752 dispersed
Smso Smso-Chr2:115489218 Smso7g00142 Smso-Chr7:2531752 dispersed
Smso Smso-Chr5:15268403 Smso7g00142 Smso-Chr7:2531752 dispersed
Smso Smso-Chr29:2926728 Smso7g00142 Smso-Chr7:2531752 wgd