Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Smso7g00142 | ATGTCACCAATAATCATATACCCAATTCTCATACTCTCCCTTCTCATCCATCCACCCCCAATCGCCGGCGATCATTCATTCATCTCGGTGCTCATAACCCAAACCGGCCTCGATTTCGTCAAGAATTTGCTCGTGACGAAAGCAATTTCTACGATCACTCCCTCCCCAATTTCCAAAATTGATAGGGTTGTTAACATCCCTGTGATTGGTAAAGTGCATACTGTTCTTTCTGACGTCACTATTTACCGGTTCAGTGTCGGGTTATCGCAAGTTATACCCGGTCCCGCCGGAGTTTCTATTGCCGGGTCGGATGTTACCTGCGGGTTGAGGATGAAATGGCATTATTCTTATGGGTCTTCGCTTGTTCCGATTTCGATTTCAGATAGTGGGACTGCTGCTATTGAGGTTAATAGCATGGAGATGGGGGTGACATTGGGCTTTAATATTCAAGAGGGATCTATGAAACTTTCCACCATTGAATGTATTTGTCATATACATGATATTTCCATAGACCTAGATGGAGGTGCATCTTGGCTCTATCAAGGGATTCTGGATGCTTTCAAAGATGAAATAGTGTCAGCAGTAGAAAAAACAATCACTAAAATACTAAAAATAGAAATTGCAAAGCTTGAATCTCTTCTACAAAGTCTTCCAAAACAAATTGCAGCGGATGATGTGGCATCATTAAATGTTACATTTGTTAACAACCCTTTTTTAAGTGACAGGTCAATAGGGTTTGAGATAAACGGGTTGTTCATAGAAAATAGAACCGACACACATTCATATGGAAACAGTTTGCAGCCACCCGTCCATTGTTCAGATCCTTCAAAAATGATTGGAATTGCCCTAGATGAAGCTGTTTTCAAATCTGCATTTGCCTTATACTACAATGCCATGTTTATGCATTGGATTGTGGATAAGATTCCTGATCAATCCCTTTTGAACACAGCAGGGTGGAGATTTATTGTTCCTCAACTCTACAAAAAATACCCAAATGATAATATGAACTTAAATCTCTCTCTATCTTATCCACCAGTTGTGCAGATATCATTGCAGAATATTGATGCTACTATTTACGCAGATTTGGTTATAGATGTTCTTGATGGGAATGACGTAATACCCGTTGCTTGTCTCTCATTGGTAATTTCTGGCACAGGTTCAGTTCAAATTACCGGAAATAACCTTGCATCTCATTTGAAAATGGATGATTTTACCATGTCATTGAAATGGAGCAAGATTGGCACCTTGCACATGTTTCTAATTCAGCCTATGATGTGGACACTGATTGAAACTGTTTTCTTGCCATATGTGAATGCGCGAATTGGGATTGGGTTCCCTTTGCCTATAATTAGCGGGTTTACGCTTCAAAATGCTGAGATAATAACCTCGGATTCTAGAATCACTGTCTGCAGCGATGTTACATATTATGAATCGTTCGATAGTACCCAAGTCTACACTTCATAG | 1464 | 39.96 | MSPIIIYPILILSLLIHPPPIAGDHSFISVLITQTGLDFVKNLLVTKAISTITPSPISKIDRVVNIPVIGKVHTVLSDVTIYRFSVGLSQVIPGPAGVSIAGSDVTCGLRMKWHYSYGSSLVPISISDSGTAAIEVNSMEMGVTLGFNIQEGSMKLSTIECICHIHDISIDLDGGASWLYQGILDAFKDEIVSAVEKTITKILKIEIAKLESLLQSLPKQIAADDVASLNVTFVNNPFLSDRSIGFEINGLFIENRTDTHSYGNSLQPPVHCSDPSKMIGIALDEAVFKSAFALYYNAMFMHWIVDKIPDQSLLNTAGWRFIVPQLYKKYPNDNMNLNLSLSYPPVVQISLQNIDATIYADLVIDVLDGNDVIPVACLSLVISGTGSVQITGNNLASHLKMDDFTMSLKWSKIGTLHMFLIQPMMWTLIETVFLPYVNARIGIGFPLPIISGFTLQNAEIITSDSRITVCSDVTYYESFDSTQVYTS | 487 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Smso7g00142 | 487 | Gene3D | - | 35 | 215 | - | - | |
| Smso7g00142 | 487 | Gene3D | - | 29 | 462 | - | - | |
| Smso7g00142 | 487 | PIRSF | Lipid-binding-protein | 6 | 481 | IPR030675 | GO:0005615(InterPro)|GO:0008289(InterPro) | |
| Smso7g00142 | 487 | SMART | bpi2-2 | 273 | 471 | IPR001124 | GO:0008289(InterPro) | |
| Smso7g00142 | 487 | PANTHER | OS06G0309200 PROTEIN | 12 | 482 | IPR045897 | - | |
| Smso7g00142 | 487 | CDD | BPI2 | 278 | 473 | - | - | |
| Smso7g00142 | 487 | Pfam | LBP - BPI - CETP family, C-terminal domain | 259 | 475 | IPR001124 | GO:0008289(InterPro) | |
| Smso7g00142 | 487 | Pfam | LBP - BPI - CETP family, N-terminal domain | 36 | 213 | IPR017942 | GO:0008289(InterPro) | |
| Smso7g00142 | 487 | SMART | bpi1-3 | 32 | 257 | IPR017942 | GO:0008289(InterPro) | |
| Smso7g00142 | 487 | SUPERFAMILY | Bactericidal permeability-increasing protein, BPI | 244 | 475 | IPR017943 | GO:0008289(InterPro) | |
| Smso7g00142 | 487 | SUPERFAMILY | Bactericidal permeability-increasing protein, BPI | 29 | 240 | IPR017943 | GO:0008289(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Smso7g00142 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Smso | Smso-Chr23:66340127 | Smso7g00142 | Smso-Chr7:2531752 | dispersed | |
| Smso | Smso-Chr2:115489218 | Smso7g00142 | Smso-Chr7:2531752 | dispersed | |
| Smso | Smso-Chr5:15268403 | Smso7g00142 | Smso-Chr7:2531752 | dispersed | |
| Smso | Smso-Chr29:2926728 | Smso7g00142 | Smso-Chr7:2531752 | wgd |