AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso7g00143 ATGCGGTCATCCATGACAATTACAAGCCCTAGCTTCCCATCTATGCCCCAATTTCACCAACCCAACACCCATCCCCCACCCTACAAACAACCCCCAATGATTACACTTCAGAACCCAACAAAACCCCATGAAATTTCAACAAAATCCCTAAAAAAATCTGGGTTTTTGTCGGCAATTGGGAACGCAATTGAAGAACAAGAGTATAGGAAAGCTAGGGCTGAAGTTATTCGAAAAGGAACCGGATTAGAGGGTTACAATATCGAGGGTGTTTCGATTGGTGGTCTTGAAACTTGTGTTATTATTCCTGAATTCAAGTGTGCGTTTGATATTGGAAGGTGTCCTCCCAGAGCTGTTGCAATGAATTTCTTGTTTATAACTCATGCTCATCTTGATCACATTGGTGGGCTACCAATGTATGTTGCAACTCGTGGTTTATACAGCATGAGTCCTCCAACCGTATTTGTACCTCCTTCCATTAAAGAAGATGTTGAAAATTTGATTGAGCTTCACAGGAAGATGGGTGATGTGGAATTAAATCTTGATTTGGTTGCATTGGATGTAGGAGAAACATATGAGCTAAGAAACGATCTTGTCGTACGCCCATTTAAAACTCATCACGTAATACCAAGTCAGGGTTATGTGATTTACTCGGTTCGCAAGAAACTGAAAAAGCAATATATTCACTTAAAAGGAAGGGAGATTGAGAAGAAAAAGAAATCTGGTGTTGAGATAACAGATATCGTATTGTCCCCGGAGGTGGCATTCACCGGTGATACAAGTTCTGATTTTCTACTTGATCCGCGAAGTTCTGATGCCTTGAGAGCCAAAGTTCTTATAACTGAGGCAACTTTCTTGGATGATAAATGTGACATTGAGCATGCGCGAGAGCATGGTCACATGCATATTGACGAGATTATAGAGCATTCTAAGTGGATTAGGAACAAGGCAATTCTTTTGACTCATTTCTCGTCACGCTACCACATCGAGGAAATCCGTCAAGCGGTGACAAAGTTGCAGGCAAAGGTTCCAGCCAAAGTTGTGCCGCTTACAGAAGGTTTTAGATCATTGTACTCACCGTAA 1080 41.57 MRSSMTITSPSFPSMPQFHQPNTHPPPYKQPPMITLQNPTKPHEISTKSLKKSGFLSAIGNAIEEQEYRKARAEVIRKGTGLEGYNIEGVSIGGLETCVIIPEFKCAFDIGRCPPRAVAMNFLFITHAHLDHIGGLPMYVATRGLYSMSPPTVFVPPSIKEDVENLIELHRKMGDVELNLDLVALDVGETYELRNDLVVRPFKTHHVIPSQGYVIYSVRKKLKKQYIHLKGREIEKKKKSGVEITDIVLSPEVAFTGDTSSDFLLDPRSSDALRAKVLITEATFLDDKCDIEHAREHGHMHIDEIIEHSKWIRNKAILLTHFSSRYHIEEIRQAVTKLQAKVPAKVVPLTEGFRSLYSP 359
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso7g00143 359 MobiDBLite consensus disorder prediction 1 29 - -
Smso7g00143 359 PANTHER TRNASE Z TRZ1 46 353 - -
Smso7g00143 359 MobiDBLite consensus disorder prediction 1 18 - -
Smso7g00143 359 Pfam Beta-lactamase superfamily domain 119 322 IPR001279 -
Smso7g00143 359 SUPERFAMILY Metallo-hydrolase-oxidoreductase 120 335 IPR036866 -
Smso7g00143 359 Gene3D - 85 354 IPR036866 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso7g00143 K00784 ribonuclease Z [EC:3.1.26.11]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr29:2932847 Smso7g00143 Smso-Chr7:2535965 wgd