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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso7g00161 ATGGTATTGAACAGGGGCGGATCGTGTAATCCGGCCGTGGTGAAGGTCGGAATTATATTATTGGGAGTGTGTTTGGTGGGTTATTTAGTGGGTCCACCTTTATACTGGCATGTTCTTGAAGGATTAGCCGCCGTCCGCCGCTCCTCCGCCGCCGTCTCCTGCCCTACCTGCAACTGCGACTGCGATTCTCAGCCCCTTCTCTCCATTCCTCAAGCGCTTAGCAATGGTTCTTTCACCGATTGTGCAAAGCATGATCCTGAAGTGAATGGAGAAACAGAAAAGAATTTTGCTGAGCTTCTATCCGAGGAATTAAAGCTACGCGAAGCTGAAGCTTTAGAAAGCCAACAACGTGCTGACATGGCACTTCTCGAGGCCAAGAAGCTGACATCACAATACCAGAAAGAAGCTGACAAGTGTAATTCAGGAATGGAGACTTGTGAAGAAGCCCGTGAAAAAGCCGAAGCAGCTTTGATTGCACAAAAACAACAAACTGAAATGTGGCAATCGAGAGCCCGCCAAAGAGGGTGGAAGGAAGGCGGCACTAAGGCGGTAAACACGCGTGAAAATAGGTATGTCACGGTTGCATAG 588 48.98 MVLNRGGSCNPAVVKVGIILLGVCLVGYLVGPPLYWHVLEGLAAVRRSSAAVSCPTCNCDCDSQPLLSIPQALSNGSFTDCAKHDPEVNGETEKNFAELLSEELKLREAEALESQQRADMALLEAKKLTSQYQKEADKCNSGMETCEEAREKAEAALIAQKQQTEMWQSRARQRGWKEGGTKAVNTRENRYVTVA 195
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso7g00161 195 Coils Coil 106 126 - -
Smso7g00161 195 Pfam Protein of unknown function (DUF1068) 12 179 IPR010471 -
Smso7g00161 195 PANTHER EXPRESSED PROTEIN 8 183 - -
Smso7g00161 195 Coils Coil 143 163 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso7g00161 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
148132 Smso18g01477 Smso7g00161
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr24:4113032 Smso7g00161 Smso-Chr7:2836769 dispersed
Smso Smso-Chr5:3619827 Smso7g00161 Smso-Chr7:2836769 dispersed
Smso Smso-Chr7:2836769 Smso7g01716 Smso-Chr7:98873548 dispersed
Smso Smso-Chr18:72544869 Smso7g00161 Smso-Chr7:2836769 wgd
Smso Smso-Chr26:42642431 Smso7g00161 Smso-Chr7:2836769 wgd
Smso Smso-Chr29:3199303 Smso7g00161 Smso-Chr7:2836769 wgd