AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso7g00162 ATGGACTTCGATATACCGACGGATCTCATCGATAAAGCTCAGATCGGATTCCGAGCAGCCGCCGGACTGTCATCTTTTGACCGGAAATACACAACTTTACCGTCCATTTCTACCGTCGAAGCGTCGATATCCTCCTTAGACCCGTCTCCGTCGTACCTGAGATGCAAAAGCTGTCAAGGTAAGCTCCTGAGAGGCTTACAGTCACTGATTTGCATTTACTGTGGGGAAAACCAGAAGAAGGATCTACATCCTGACCCTATCTCCTTCAATTCCACCCATGGTTATAGCTGGTTACTTCAATCATTGAACTTCAACGGATCGGAAAGAATCGGGTCATTAGCTGAAGGAAGTGAAATAAACGGAGGGCAGAGTCCTGCAGAAGACGAGTTAACTTTATCTGAGCTTCTAGATTTGAAAATTTCATGGCAGCATGAGCCTGAAAAACTTGAAAATAATTTCAATATCAAAACCTCTGAACATAACAGTTCTTTAGATCTTGGTACAACCGATTTTGACCACTTCTTTTCAAAGTCAATGCAAAAGAGTGCAATTGCGTCTGATGATGTACTCGAAGAACAACCAGTTGCCAGTAAAGCAGATCAACATAGGATTATTGAGGGTCAAGAAAATATTACTTCTGATTGGAATGCAGAATTTCAATTTGCAGATACCAAAAAGGAAAATGAGAAGCTCGAATCAGTTGACCTATTTGAAGGTGCTGAAGCGGACCTGTCTGCCCACATGGATGTGGCTTTTGGACAGACAGAGAGCTTTGATTTCAAAAAACCGAATGATAATTCAGACCCGTTTCAAGATGACCTTTTTGCCAACATGGGTTCTGCAACTTTTCAGCAGAATGAGCAGTTGGATTCAGTTGTTCAAGCAAAAGATGGTTTATCTGGTGATCTAAACGATTTTAACTCAAAAAATGTGGATGGAGACTGGTTTAATGATGGTAATTGGCAGAAAAGTAGTGTAAAAAGCACATTAAATGACGTGTCCTTGCAGGATAATCCAAATGATTCATCAACAGATCGGTTTGAAAACGCTAACTGGCAGAAAAGTAGTGCCAACAACACGGCTACCATTAAAGATGATAATTACACATTACACGATGGATCCTTACAGGATAATCCAAATGACATATCAACAGATTGGTTTGAAGATACTAACTGGCAGAAAGTTAGTACCAACAACACCACGGCTACCATTAAAGAAGATAATTTATTTGATAGTAAACCACATGCAAATGACTTGATTCAGTCTGAAAAGCCGGATCTTGATAATTCAGACAAACACCATTCAGACATTACTGACTGGTTTCAAAATAGTCAGTGGGCGATTGGTGGTTCTAGTTCTACTCCCAGTATTGTGGTCAGCAAAGATGATGATGATGATGGGTTTGGTGAATGGAATGATTTCACAAACTCAACTGGTAATCAAGATTCTTGGAAAGAAAGTGGCAACGAGAAAGCGGATTTTGGTACTAGTGAAAAGATGTCGGAATTAAATTTGTTTCAATCTGCAGTTAATTCACAGGAAGTGGATTTTGGCAACTTCTTGCAGTCCGATATATTTTCTGGTGACAAAAATTCAAATGATACTCGGGCAGCGTATGATATCTTTTCAGAAGCATCTACAGCAGTCAGGAATGCTAATACTGAAGCTGGAGATAATGTGGAGGGATCAAAGAATGACGAAATTACCCCTAATGCAACCGCAAGTCTAAAAGATGATGTACAAATGCTGATGTCACAGATGCATGACCTGTCATTCATGCTTAAAAACGAGCTTTCAGTTCCCTCAAAGCCCGATGATATTGGCTCGTCTCACAGTTAA 1839 40.18 MDFDIPTDLIDKAQIGFRAAAGLSSFDRKYTTLPSISTVEASISSLDPSPSYLRCKSCQGKLLRGLQSLICIYCGENQKKDLHPDPISFNSTHGYSWLLQSLNFNGSERIGSLAEGSEINGGQSPAEDELTLSELLDLKISWQHEPEKLENNFNIKTSEHNSSLDLGTTDFDHFFSKSMQKSAIASDDVLEEQPVASKADQHRIIEGQENITSDWNAEFQFADTKKENEKLESVDLFEGAEADLSAHMDVAFGQTESFDFKKPNDNSDPFQDDLFANMGSATFQQNEQLDSVVQAKDGLSGDLNDFNSKNVDGDWFNDGNWQKSSVKSTLNDVSLQDNPNDSSTDRFENANWQKSSANNTATIKDDNYTLHDGSLQDNPNDISTDWFEDTNWQKVSTNNTTATIKEDNLFDSKPHANDLIQSEKPDLDNSDKHHSDITDWFQNSQWAIGGSSSTPSIVVSKDDDDDGFGEWNDFTNSTGNQDSWKESGNEKADFGTSEKMSELNLFQSAVNSQEVDFGNFLQSDIFSGDKNSNDTRAAYDIFSEASTAVRNANTEAGDNVEGSKNDEITPNATASLKDDVQMLMSQMHDLSFMLKNELSVPSKPDDIGSSHS 612
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso7g00162 612 MobiDBLite consensus disorder prediction 327 358 - -
Smso7g00162 612 PANTHER DENTIN SIALOPHOSPHOPROTEIN-RELATED 1 418 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso7g00162 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
148129 Smso18g01476 Smso7g00162
154173 Smso7g00162 Smso9g00737
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr22:69720099 Smso7g00162 Smso-Chr7:2845748 transposed
Smso Smso-Chr18:72529257 Smso7g00162 Smso-Chr7:2845748 wgd
Smso Smso-Chr26:42648170 Smso7g00162 Smso-Chr7:2845748 wgd
Smso Smso-Chr29:3221751 Smso7g00162 Smso-Chr7:2845748 wgd
Smso Smso-Chr7:2845748 Smso9g00737 Smso-Chr9:17136407 wgd