AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso7g00166 ATGGTAAATGCTTTCTGCTTCCCTTCTCTTTCATTTATACTTGATCGCTTGGTTTCTGTTGGACTTAAGAAGAGGAAAATCAACCAGTTGAATCAAATTGGATATGCTAGAAGAGATTATGGTGGTCTTGGTAATTTGAGGGATTCGGGTGGTGATGTTATTGCTCTAAAGAATTACATGGATGCTCAGTATTATGGTGAGATTGGTATTGGTACTCCACCTCAAAAGTTCACTGTAGCCTGCCTTGTTCACTCAAAGTACAACATGGTGAAACAAGATCTTGTTCATGAACCCGTATTTTCATTTTGGCTTAATCGCAATGCTGACGAGGATGAAGGGGGTGAACTTGTGTTTGGTGGAGTTGACAATAATCATTTCAGGGGTAGACACACATATGTCCCTGTAACTCAGAAAGGTTATTGGCAGTTTGAAATGGGTGATGTCTTGATTGGATTTTGCTCCAGTGGTTGTGCAGCAATTGCTGATTCTGGAACCTCTTTGTTGGCTGGTCCAACGGCTGTTATTACTCAAATCAATCAAGCCATTGGTGCCGCTGGTGTTGTGAGCCAACAATGCAAGACATTGATCAATCAGTATGGAAAAACTATACTTGAGATACTCATGCATGAGACACAACCTAAAAGAATCTGCTCGCAAATGAGGTTATGCTCCTTTGACGGTTCTCATGATACTAGCATGATAATTGAGAGTGTGGTTGACAAGAACAATGGAAAATCATCTGGTGTGCATGATGAGATGTGTAATCTCTGCGAGATGGCTGTTGTTTGGATGGAAACCAAAATACAGCGAAATGAAACCGAAGAACAAATAATTAACTATGCTGATCAGCTGTGTGAACGGTTGCCAAGTCCAATGGGAGAATCTGGAGTTGATTGCAATAGTCTTTCATCCATGCCCATTGTTGCTTTTACCATTGGTGGTAAAACTTTTGACCTCTCCCCTGAGCAGTATATCCTGAAAATTGGTGAGGGAGCAGCAGCACAATGCATCAGTGGATTTACTGCTCTTGATGTGGCACCTCCTCGTGGGCCCCTATGGATCTTGGGAGATATTTTTATGGGTAAATACCATACGGTGTTTGACTATGGTAAATCAAGAGTTGGGTTTGCAGAAGCAGTTTGA 1143 41.64 MVNAFCFPSLSFILDRLVSVGLKKRKINQLNQIGYARRDYGGLGNLRDSGGDVIALKNYMDAQYYGEIGIGTPPQKFTVACLVHSKYNMVKQDLVHEPVFSFWLNRNADEDEGGELVFGGVDNNHFRGRHTYVPVTQKGYWQFEMGDVLIGFCSSGCAAIADSGTSLLAGPTAVITQINQAIGAAGVVSQQCKTLINQYGKTILEILMHETQPKRICSQMRLCSFDGSHDTSMIIESVVDKNNGKSSGVHDEMCNLCEMAVVWMETKIQRNETEEQIINYADQLCERLPSPMGESGVDCNSLSSMPIVAFTIGGKTFDLSPEQYILKIGEGAAAQCISGFTALDVAPPRGPLWILGDIFMGKYHTVFDYGKSRVGFAEAV 380
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso7g00166 380 PRINTS Saposin signature 251 273 IPR008373 GO:0005764(InterPro)|GO:0006665(InterPro)
Smso7g00166 380 PRINTS Saposin signature 199 217 IPR008373 GO:0005764(InterPro)|GO:0006665(InterPro)
Smso7g00166 380 ProSiteProfiles Peptidase family A1 domain profile. 1 377 IPR033121 -
Smso7g00166 380 ProSiteProfiles Saposin B type domain profile. 187 227 IPR008139 -
Smso7g00166 380 SUPERFAMILY Acid proteases 17 379 IPR021109 -
Smso7g00166 380 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 159 170 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Smso7g00166 380 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 51 79 IPR001461 GO:0004190(InterPro)|GO:0004190(PANTHER)|GO:0006508(InterPro)|GO:0006508(PANTHER)
Smso7g00166 380 ProSiteProfiles Saposin B type domain profile. 250 291 IPR008139 -
Smso7g00166 380 Pfam Saposin-like type B, region 2 190 223 IPR008138 -
Smso7g00166 380 Gene3D Acid Proteases 19 81 IPR021109 -
Smso7g00166 380 Gene3D Acid Proteases 83 120 IPR021109 -
Smso7g00166 380 Pfam Eukaryotic aspartyl protease 87 379 IPR033121 -
Smso7g00166 380 SUPERFAMILY Saposin 188 289 IPR011001 -
Smso7g00166 380 Gene3D - 187 289 - -
Smso7g00166 380 FunFam Lysosomal aspartic protease 80 185 - -
Smso7g00166 380 FunFam Vacuolar aspartic proteinase 252 379 - -
Smso7g00166 380 Gene3D Acid Proteases 121 379 IPR021109 -
Smso7g00166 380 Pfam Saposin-like type B, region 1 253 289 IPR007856 GO:0006629(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso7g00166 K08245 phytepsin [EC:3.4.23.40]
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Event-related genes

Select Gene_1 Gene_2 Event_name
148127 Smso18g01473 Smso7g00166
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr4:77519843 Smso7g00166 Smso-Chr7:2945442 dispersed
Smso Smso-Chr7:2945442 Smso7g01170 Smso-Chr7:39246340 dispersed
Smso Smso-Chr1:86845616 Smso7g00166 Smso-Chr7:2945442 wgd
Smso Smso-Chr12:71736205 Smso7g00166 Smso-Chr7:2945442 wgd
Smso Smso-Chr18:72507684 Smso7g00166 Smso-Chr7:2945442 wgd
Smso Smso-Chr25:17533988 Smso7g00166 Smso-Chr7:2945442 wgd
Smso Smso-Chr26:43023497 Smso7g00166 Smso-Chr7:2945442 wgd
Smso Smso-Chr29:3299587 Smso7g00166 Smso-Chr7:2945442 wgd