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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso7g00176 ATGGATGAAGTACCGGGATCAACCGGGACAAGTGCAGGATTCGCTCTACGGCTCGGTCAAACCATCTTCTCTTCTGCTTCTCTTCTGTTCATGTCGTTTGGTGTTCAGTTTTACAGCTATACATCTTTCTGCTTCTTGGTGACCATTATGGGTTTGGTGATTCCATGGAGTTTCATCTTAGCACTGCTTGATGGGTACTCGGTTCTTGTAACCTGCCCGATTCGGCAAAAGAGGATACTGTTTATAATTGTGCTAATGGTTACGTGTTTGATTAATTGGAAGCAGTTGTTGTCGACACTCGCACTCGGGGCAGCCTCGTCTGCGGCCAGCGTGGTGGATGTCTTGCTTTCGGCTGACGGGTCGGTCTGCCTTCCAAGAATCTGCAGCCGGTATTTGATTTCGACTGTATTTGCTTTCTTGTCATGGTTTTTGTCTATGGCTTCTTCTCTGTTCAATTTGTGGATTCTTCCATCTTTGTGA 480 46.46 MDEVPGSTGTSAGFALRLGQTIFSSASLLFMSFGVQFYSYTSFCFLVTIMGLVIPWSFILALLDGYSVLVTCPIRQKRILFIIVLMVTCLINWKQLLSTLALGAASSAASVVDVLLSADGSVCLPRICSRYLISTVFAFLSWFLSMASSLFNLWILPSL 159
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso7g00176 159 PANTHER CASP-LIKE PROTEIN 5B3 1 158 IPR045009 GO:0016020(PANTHER)
Smso7g00176 159 Pfam Casparian strip membrane protein domain 8 144 IPR006702 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso7g00176 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr6:21336047 Smso7g00176 Smso-Chr7:3111250 dispersed
Smso Smso-Chr29:3436397 Smso7g00176 Smso-Chr7:3111250 wgd