AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso7g00179 ATGGATGAAACGGAGAAGCCGTCGGAAGCCAAGAGAACCACCGTCGGGCCACCCTCCGTTTTGGCCTACCTCGATCCTAATTACTGGAATGAGAGGTTCACTTCTGAGGATCATTACGAATGGCTTAAAGATTACTCTCATTTTCGTCATCTGATTCAGCAGCACATCAAACCTGATTCTTCAGTATTGGAGCTCGGGTGTGGAAACTCACAACTGTGTGATGAGTTATATAAAGAAGGAATTTCTAAACTAACCTGCATTGATCTATCATCAGTTGCAGTTGCGAAAATGCAAAAACGGTTGTTTTCTAAAGGCTACAAAGATGTCAAAAGAAAGGAACCATGTGGTGACCCGTGGAACCCACGACCTGAGGCTGAAAACAAAGCAATGGCAATGCTTCAAGGCGTTCATAGGGTTCTGAAACCCCATGGGATTTTTATCTCAATCGCTTTTGGTCAGCCACATTTCCGGCGCCCATTTAATGCTCCTGAGTTTACATGGTCCATTGACTACACTACATTTGGAGATGGATTTCATTATTTTTTTTATATCTTGAGGAAGAATGAATTATGA 573 42.58 MDETEKPSEAKRTTVGPPSVLAYLDPNYWNERFTSEDHYEWLKDYSHFRHLIQQHIKPDSSVLELGCGNSQLCDELYKEGISKLTCIDLSSVAVAKMQKRLFSKGYKDVKRKEPCGDPWNPRPEAENKAMAMLQGVHRVLKPHGIFISIAFGQPHFRRPFNAPEFTWSIDYTTFGDGFHYFFYILRKNEL 190
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso7g00179 190 Pfam Methyltransferase domain 57 110 IPR025714 -
Smso7g00179 190 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 27 182 IPR029063 -
Smso7g00179 190 Gene3D Vaccinia Virus protein VP39 112 190 IPR029063 -
Smso7g00179 190 Gene3D Vaccinia Virus protein VP39 21 111 IPR029063 -
Smso7g00179 190 PANTHER SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 15 188 IPR051419 -
Smso7g00179 190 CDD AdoMet-MTases 62 151 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso7g00179 K22857 EEF1A lysine methyltransferase 4 [EC:2.1.1.-]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr29:3551470 Smso7g00179 Smso-Chr7:3145736 wgd