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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso7g00189 ATGGCTTCTTCTTCTTCCGCTTGCAGTTTCATCTTCTACGCTCTATTGCTTATCCAACTTTGCAGTGCTCGTGAGATCATGGACAAGAACCAGAACAACGATCACAAAGAAGAAAATCGTATAAGTATTTATGGGAAGAATGGTGCTTCTGATTTGGATCCGGCTCTAAATGTGTTCTTTCATGTGAATGATTTATATTCTGGCAAAAAAATGCCAATTTATTTCGCGGTTAATGATCCTTCAACAACTCCTCGGTTGTTAACTAGAGAACAATCCGATTTGATACCATTTTCCTCAAAAAAACTCGCGTATCTTCTAGAATTTATATCATTAGCCGAGGGTTCGCCTCAAGCTCTAGCCATGGAGCAAACACTCAAACAGTGTGAGCTTGAGGCAACCCCTGGCGAGACCAGGTTTTGCGCTAGTTCGTTAGAGTCCATGCTGGACTCTACACGAGGGATATTGGGTATGGTCAAACTGAAAGCGTTGACCACCAATATCCGTAATTTGTCTAGTACCCTTTTGCAAGGGTACACCTTTTTGAAGGAGCCATTGGAGATCAATGTTTCTGATATGGTGGCTTGTCATACCATGGCTTATCCTTAA 606 41.91 MASSSSACSFIFYALLLIQLCSAREIMDKNQNNDHKEENRISIYGKNGASDLDPALNVFFHVNDLYSGKKMPIYFAVNDPSTTPRLLTREQSDLIPFSSKKLAYLLEFISLAEGSPQALAMEQTLKQCELEATPGETRFCASSLESMLDSTRGILGMVKLKALTTNIRNLSSTLLQGYTFLKEPLEINVSDMVACHTMAYP 201
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso7g00189 201 SMART BURP-2 57 201 IPR004873 -
Smso7g00189 201 Pfam BURP domain 58 201 IPR004873 -
Smso7g00189 201 ProSiteProfiles BURP domain profile. 59 201 IPR004873 -
Smso7g00189 201 PANTHER BURP DOMAIN PROTEIN USPL1-LIKE 37 201 IPR044816 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso7g00189 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
154175 Smso7g00189 Smso9g00769
154176 Smso7g00189 Smso9g00770
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr7:3235190 Smso9g00770 Smso-Chr9:18343364 dispersed
Smso Smso-Chr7:3235190 Smso7g00191 Smso-Chr7:3284334 proximal
Smso Smso-Chr18:71764402 Smso7g00189 Smso-Chr7:3235190 wgd
Smso Smso-Chr26:47413736 Smso7g00189 Smso-Chr7:3235190 wgd
Smso Smso-Chr29:3622057 Smso7g00189 Smso-Chr7:3235190 wgd
Smso Smso-Chr7:3235190 Smso9g00769 Smso-Chr9:18322230 wgd