AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso7g00195 ATGCATCTTCTCCTTCCACCGACGACACTATGCTCTTACTCCGACCACCGTCCTCCGCCACACCGCCACCTCCAGTTCCGAACATCTCACCACAAAAACCTCCGTTACCTCAAATCACTCGGCATCACCCAACCGGAATTAACAACAAAAACAGTCTCTCAAATCCTCACAACCATACAATTCCTCAAATCCAAAGGCTTTTCCGAACCAGATTTCCCGCGAATCGCTTTCCTCTCCCCCAATCTCTTCACCTCCGATCCCAAAACCCTAGAACCGGTTTTCAAATTCCTAACGGTCGAATTAGCTGCCTCACCTGAAGATTCCCGTGGATTAATCCTCAAATGCCCTCACATCCTCGAATCTGACCCCGAATTCGTCTTAAAACCAACACTCGATTACCTGAAAAAATTGGGGATTAATCGGTTGAACACTCCAACAACTCTGAATGCACATTTGCTGGATACTAGAGTTTGTAAATTCGAAGAGAAGACGCGGTTTTTAGAAGAGGTTGGGTTTTCTGAGGCGGAATCGCGGAGGGTTTGTGGGCGGTTTCCGGCGATATTTGGGTATGGAATAGAGAATAATTTGAGGGTGAAGTATGTGTATTTGGTGAGGGAGATGAAGAGAGATGGTAGGGATGAAGTGAGGAGGTTTCCACAGTATTTTGGATTTAGTTTGGAGAAGAGGATAAGGCCTAGGCATTTGCATTTGAAACAGAGGAAGGTTGATGAGGAGGTGCCCTTGAATAGGATGTTGTTGTGGGATGATGATAGGTTTTACAAGAAATGGAAATGA 795 45.66 MHLLLPPTTLCSYSDHRPPPHRHLQFRTSHHKNLRYLKSLGITQPELTTKTVSQILTTIQFLKSKGFSEPDFPRIAFLSPNLFTSDPKTLEPVFKFLTVELAASPEDSRGLILKCPHILESDPEFVLKPTLDYLKKLGINRLNTPTTLNAHLLDTRVCKFEEKTRFLEEVGFSEAESRRVCGRFPAIFGYGIENNLRVKYVYLVREMKRDGRDEVRRFPQYFGFSLEKRIRPRHLHLKQRKVDEEVPLNRMLLWDDDRFYKKWK 264
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso7g00195 264 Gene3D Transcription termination factor 3, mitochondrial 16 264 IPR038538 -
Smso7g00195 264 Pfam mTERF 107 259 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Smso7g00195 264 Pfam mTERF 44 140 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Smso7g00195 264 PANTHER CGI-12 PROTEIN-RELATED 39 262 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Smso7g00195 264 SMART mt-12 109 140 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Smso7g00195 264 SMART mt-12 73 104 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Smso7g00195 264 SMART mt-12 178 210 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Smso7g00195 264 SMART mt-12 212 243 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Smso7g00195 264 SMART mt-12 38 68 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso7g00195 K15031 mitochondrial transcription termination factor family protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr29:3721311 Smso7g00195 Smso-Chr7:3335099 wgd
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Smso mTERF 2.4e-29 No_clan TR mTERF