AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso7g00196 ATGGCTGAAAATTTGATACAGAGGCTGGAGGTCGCCGTATCGCGGCTGGAATCATTCTCCCGCAGTTCTCAGCCCCAGGCTGCCGCACTTGACGCCGCATCAGCCTCATCGGAACCGTCAATCGTCGCATTTGACGATCTGATAACGGAATACGTCGACAAGGTCTCCAGCGCGGCGGAGAAGATTGGCGGACAAGTTAACGATATTACAAAGGTTCTCAGGGAGGCTTTTTCCGCTCAGAAGGCGCTTCTCGCTAAGATCAAACAAACTCAGAAACCTGATGCTGGAGGAATGGCGGAATTTCTCAGGCCAGTAAATGAAAAACTAACTGAAGCAACTAAAATGACAGAAGGACGCCGTTCTGATTTCTTTAACCACTTAAGATCTGTTGCTGAAAGTCTATCAGCTTTAGCATGGATTGCATATGCAGGGAAAAACTGTGGAATGAGCATGCCTATTGCACATGTTGAAGAATGTTGGCAGTCAGCTGAGTTTTACAATAACAAGGTTCTTGTAGAATTCAAAAATAAAGATTCAAGTCATGTGGAATGGGCAAAAGCTCTCAAGGAACTTTATGTACCAGGGTTAAGGGATTATGTTAAGAATCACTATCCTTTGGGACCCGTATGGAGTACAACAGGGGTAACTGTATCTGCCCCATCAAATGCTTCTAAACCAGGTGCTCCTGCTGCTCCAAATCCCCCACCAGCTTCACTTGCCAGCTCAGCATCTTCGTCATCATCATCTTCATCCCGTCCAACACAAGGAATGTCTGCTGTTTTTCAAGAAATTAGTTCAAAGCCCGTTACTGCTGGATTGAAAAAAGTTACAGATGATATGAAGACGAAAAACCGCACAGATAGAGCAGGATTTGTGAGCACTGGTGAAAAAGAAGCCCGCAAGAGTGTGCCATCAGCTGCTAAAGTTGGTCCTCCAAAATTTGAGCTTGTAATGGGTCGCAAATGGGTCGTTGAGAATCAAATTGGCGTGAAGGATTTGTTGATTGATGATTGTGATCCAAGGCAAACAGTTTATATTTTTGCATGCAAAGATTCAGTTCTTCAGATCAAAGGGAAAGTTAACAACATAACTGTTGACAAATGTACAAAAATGGGTGTTGACGTTGTTGCTGCTTTTGAGATTGTTAATTGCAGCGGCGTTGAGGTTCAATGCCAGGGTGCTGCCCCTACCATTTCAATAGACAACACGGCCGGTTGCACGCTGTACTTGAGCAAAGATTCTATAGAATCTTCTATCACAACTTCCAAGGCAAGTGAAGTTAATGTGATGGTACCTGCCAATGATCCTGATGCTGATCTGGCGGAACATGCTATGCCATATCAGTACATTCACACTTACCAGGACGGCCACTTTGTTACAACCCCCGTCGCCCACTCTGGAGGGTAA 1407 44.99 MAENLIQRLEVAVSRLESFSRSSQPQAAALDAASASSEPSIVAFDDLITEYVDKVSSAAEKIGGQVNDITKVLREAFSAQKALLAKIKQTQKPDAGGMAEFLRPVNEKLTEATKMTEGRRSDFFNHLRSVAESLSALAWIAYAGKNCGMSMPIAHVEECWQSAEFYNNKVLVEFKNKDSSHVEWAKALKELYVPGLRDYVKNHYPLGPVWSTTGVTVSAPSNASKPGAPAAPNPPPASLASSASSSSSSSSRPTQGMSAVFQEISSKPVTAGLKKVTDDMKTKNRTDRAGFVSTGEKEARKSVPSAAKVGPPKFELVMGRKWVVENQIGVKDLLIDDCDPRQTVYIFACKDSVLQIKGKVNNITVDKCTKMGVDVVAAFEIVNCSGVEVQCQGAAPTISIDNTAGCTLYLSKDSIESSITTSKASEVNVMVPANDPDADLAEHAMPYQYIHTYQDGHFVTTPVAHSGG 468
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso7g00196 468 ProSiteProfiles C-CAP-cofactor C-like domain profile. 311 445 IPR017901 -
Smso7g00196 468 MobiDBLite consensus disorder prediction 218 257 - -
Smso7g00196 468 ProSitePatterns CAP protein signature 1. 5 17 IPR018106 -
Smso7g00196 468 SUPERFAMILY C-terminal domain of adenylylcyclase associated protein 311 467 IPR036223 -
Smso7g00196 468 SUPERFAMILY N-terminal domain of adenylylcyclase associated protein, CAP 40 235 IPR036222 -
Smso7g00196 468 FunFam Adenylyl cyclase-associated protein 40 215 - -
Smso7g00196 468 PANTHER ADENYLYL CYCLASE-ASSOCIATED PROTEIN 3 466 IPR001837 GO:0003779(InterPro)|GO:0003779(PANTHER)|GO:0005737(PANTHER)|GO:0007010(InterPro)|GO:0007015(PANTHER)|GO:0008179(PANTHER)|GO:0019933(PANTHER)
Smso7g00196 468 Pfam CAP N-terminal conserved motif 3 39 IPR013992 GO:0003779(InterPro)|GO:0007010(InterPro)
Smso7g00196 468 Gene3D - 310 467 IPR016098 -
Smso7g00196 468 FunFam Adenylyl cyclase-associated protein 310 467 - -
Smso7g00196 468 Pfam Adenylate cyclase associated (CAP) C terminal 311 465 IPR013912 GO:0003779(InterPro)|GO:0007010(InterPro)
Smso7g00196 468 Gene3D - 40 215 IPR036222 -
Smso7g00196 468 Pfam CAP, N-terminal domain 44 206 IPR053950 -
Smso7g00196 468 SMART carp 349 383 IPR006599 -
Smso7g00196 468 SMART carp 384 421 IPR006599 -
Smso7g00196 468 MobiDBLite consensus disorder prediction 237 257 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso7g00196 K17261 adenylyl cyclase-associated protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
143047 Smso10g03407 Smso7g00196
147044 Smso16g01553 Smso7g00196
152097 Smso24g00719 Smso7g00196
431898 Smso26g02053 Smso7g00196
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr5:16980105 Smso7g00196 Smso-Chr7:3341034 dispersed
Smso Smso-Chr10:89426415 Smso7g00196 Smso-Chr7:3341034 wgd
Smso Smso-Chr13:3170258 Smso7g00196 Smso-Chr7:3341034 wgd
Smso Smso-Chr16:76497885 Smso7g00196 Smso-Chr7:3341034 wgd
Smso Smso-Chr24:14211068 Smso7g00196 Smso-Chr7:3341034 wgd
Smso Smso-Chr26:46821375 Smso7g00196 Smso-Chr7:3341034 wgd
Smso Smso-Chr29:3726658 Smso7g00196 Smso-Chr7:3341034 wgd