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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso7g00198 ATGGCCATTACCGATAATTTGGTGGCATCAGAAACTGGAAGCTTGGAACACCGGAGTGGCTCATCATCGAAATCTTCTCAGAGAAATGGCCGCATTTTAGCTCGGAAGTCGATCTCAGCTATTCGCAATCGACAGCTTGTTTTGGCAGGACAAGTGTTGCAGGGCCCTAACAATGGGACAATTTCTGGTGCATGCTCATTTGCAACCAAACACTCATTCTCAACTGATAAAGATGATGAGGAAAGAGAAAAACTTGCAAAGGAGATCTCTAAAGACTGGAGTTCTGTCTTCGAACGGAGCATAAATACATCATTTCTAACTGAATTGGTTCGAGGTTTATCTCTGACGCTCAAATACTTCTTTGAGCCCAAAGTTACTATTAATTATCCATTTGAGAAGGGTCCTTTGAGCCCTCGATTTCGAGGAGAACATGCTCTCAGACGTTATGCAACTGGAGAAGAACGTTGTATTGCCTGTAAACTTTGTGAAGCTATATGTCCTGCTCAGGCTATCACCATAGAAGCAGAGGAACGTGAAGATGGCAGCCGTAGAACAACAAGGTATGACATTGATATGACAAAGTGTATATACTGTGGATTCTGCCAAGAAGCATGCCCTGTTGATGCAATCGTTGAAGGCCCCAACTTTGAGTTTGCTACTGAAACGCATGAGGAACTCCTGTATGATAAGGAAAAGCTTCTTGAAAACGGGGACCGATGGGAAACTGAGATTGCTGAGAACCTTAGATCCGAGAGCCTTTATCGATAA 768 43.49 MAITDNLVASETGSLEHRSGSSSKSSQRNGRILARKSISAIRNRQLVLAGQVLQGPNNGTISGACSFATKHSFSTDKDDEEREKLAKEISKDWSSVFERSINTSFLTELVRGLSLTLKYFFEPKVTINYPFEKGPLSPRFRGEHALRRYATGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 255
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso7g00198 255 PANTHER NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL 88 255 IPR010226 GO:0003954(PANTHER)|GO:0005747(PANTHER)|GO:0006120(PANTHER)|GO:0009060(PANTHER)|GO:0016020(InterPro)|GO:0016651(InterPro)|GO:0032981(PANTHER)|GO:0045272(PANTHER)|GO:0051539(InterPro)
Smso7g00198 255 Gene3D - 129 254 - -
Smso7g00198 255 NCBIfam NADH-quinone oxidoreductase, chain I 112 233 IPR010226 GO:0016020(InterPro)|GO:0016651(InterPro)|GO:0051539(InterPro)
Smso7g00198 255 FunFam NADH-quinone oxidoreductase subunit I 1 129 252 - -
Smso7g00198 255 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 186 215 IPR017896 -
Smso7g00198 255 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 147 176 IPR017896 -
Smso7g00198 255 SUPERFAMILY 4Fe-4S ferredoxins 129 239 - -
Smso7g00198 255 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 156 167 IPR017900 -
Smso7g00198 255 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 195 206 IPR017900 -
Smso7g00198 255 Pfam 4Fe-4S dicluster domain 155 209 IPR017896 -
Smso7g00198 255 Hamap NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 103 239 IPR010226 GO:0016020(InterPro)|GO:0016651(InterPro)|GO:0051539(InterPro)
Smso7g00198 255 MobiDBLite consensus disorder prediction 1 30 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso7g00198 K03941 NADH dehydrogenase (ubiquinone) Fe-S protein 8 [EC:7.1.1.2]
Smso7g00198 K00338 NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
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Event-related genes

Select Gene_1 Gene_2 Event_name
154179 Smso7g00198 Smso9g00764
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr8:70923798 Smso7g00198 Smso-Chr7:3383433 transposed
Smso Smso-Chr18:71884212 Smso7g00198 Smso-Chr7:3383433 wgd
Smso Smso-Chr29:3778666 Smso7g00198 Smso-Chr7:3383433 wgd
Smso Smso-Chr7:3383433 Smso9g00764 Smso-Chr9:18204087 wgd