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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso7g00215 ATGAGGTTGATTTATGTCAACTGGAGTGATCAGTTGAACAGTGAGAGATTTATGGCAGATCAAGTGTTGGAGGGTAGCCAACCAGTTGATCTCTCTAAGCACCCATCTGGAATTGTTCCTACTCTTCAGAATATTGTGTCCACTGTGAATCTTGATTGCAAGCTAGACCTTAAGGCGATTGCTCTACAAGCTCGTAATGCAGAGTATAACCCAAAGCGTTTTGCTGCTGTAATCATGAGGATAAGAGAACCAAAAACAACTGCCTTAATCTTTGCTTCTGGGAAAATGGTTTGTACAGGAGCCAAGAGTGAACAGCAATCCAAACTGGCAGCACGAAAGTATGCCAGAATTATTCAGAAACTTGGTTTCCCAGCCAAATTTAAGGATTTCAAGATTCAGAATATCGTTGGTTCATGTGATGTAAAATTTCCCATTAGACTTGAAGGCCTTGCTTATTCTCACGGTGCCTTTTCAAGTTATGAACCAGAACTATTCCCGGGACTTATATATCGAATGAAACAACCAAAAATCGTTCTCCTAATTTTTGTTTCTGGGAAAATTGTTCTTACAGGAGCCAAGGTCAGAGATGAGACGTATACTGCCTTTGAGAACATATATCCCGTCCTTACTGAATTCAGAAAGAATCAACAGTGGGAAAATATTCTTGAGATGGATGAAATGGTGGTGAAAGTTGACTTTAGGGTTTGA 708 39.97 MRLIYVNWSDQLNSERFMADQVLEGSQPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQWENILEMDEMVVKVDFRV 235
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso7g00215 235 ProSitePatterns Transcription factor TFIID repeat signature. 160 209 IPR030491 -
Smso7g00215 235 PRINTS Transcription initiation factor TFIID signature 42 57 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Smso7g00215 235 PRINTS Transcription initiation factor TFIID signature 175 191 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Smso7g00215 235 PRINTS Transcription initiation factor TFIID signature 66 85 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Smso7g00215 235 PRINTS Transcription initiation factor TFIID signature 85 103 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Smso7g00215 235 PRINTS Transcription initiation factor TFIID signature 132 148 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Smso7g00215 235 PRINTS Transcription initiation factor TFIID signature 156 171 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Smso7g00215 235 FunFam TATA-box-binding protein 2 131 212 - -
Smso7g00215 235 SUPERFAMILY TATA-box binding protein-like 129 218 - -
Smso7g00215 235 FunFam TATA-box-binding protein 2 47 130 - -
Smso7g00215 235 Hamap TATA-box-binding protein [tbp]. 36 215 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Smso7g00215 235 SUPERFAMILY TATA-box binding protein-like 38 131 - -
Smso7g00215 235 Gene3D - 47 132 IPR012295 -
Smso7g00215 235 Pfam Transcription factor TFIID (or TATA-binding protein, TBP) 40 121 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Smso7g00215 235 Pfam Transcription factor TFIID (or TATA-binding protein, TBP) 129 212 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Smso7g00215 235 CDD TBP-eukaryotes 39 212 IPR033710 GO:0003677(InterPro)|GO:0006352(InterPro)
Smso7g00215 235 Gene3D - 43 211 IPR012295 -
Smso7g00215 235 PANTHER TATA-BOX BINDING PROTEIN 24 217 IPR000814 GO:0003677(InterPro)|GO:0006352(PANTHER)|GO:0006352(InterPro)|GO:0016251(PANTHER)|GO:0140223(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso7g00215 K03120 transcription initiation factor TFIID TATA-box-binding protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
143026 Smso10g03392 Smso7g00215
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr10:89194369 Smso7g00215 Smso-Chr7:3779941 wgd
Smso Smso-Chr16:76875473 Smso7g00215 Smso-Chr7:3779941 wgd