Gene detail

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Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Smso7g00234	ATGGAGAGCAAAGACAAGCTCAAAATCGCGTTTACTATTACATGTGTTGCTGTAGTTTCAATTTTAATGGCGAACAAATTTCGGAAACAGCGAAAGCGAAAACAGAACGTAAGCTCTTGTTACTTGAAATCGGAAGCTAAACCGCAGCACAATTTCAAGCGTGTCTTAGCGAACAATTCGTATGCTCCATTCAAGCACCTCAAGCTCGACGAAAATTCTTCGGATTTGCATCCGTATGAATCAGAGATCAAGGCTATCTTGGAGAAATCAGAGCTAGAATTCGAGTTTTCTTGTGGAATTATGGATATGAGCATGAGTGATACGTATGTTTGGGTTGATGATGAATCAAAGTTAAAAGGACTTGTAGAGGTTTTGAATAAAGAAATAGTGTTTGCTGTGGATACTGAACAGCATAGCTTACGATCATTCTTAGGGTTTACAGCTCTTATTCAGATTTCTACTAGAGATGAAGATTATTTGGTGGACACCATTGCTGTTCATGATATTATGGGAATTCTTGGCCCTGTATTTGCCAATCCCAATACATGCAAGGTGTTCCATGGTGCTGATAATGATGTTATATGGCTACAAAGGGATTTTCATATTTATATTGTAAACTTATTTGACACTGCAAAGGCTTGTGATGTGTTATCAAAACCACAAAGGTCATTAGCCTACTTACTTGAAACATATTGTGGTGTCACTACTAACAAGCTTTACCAGCGTGAAGATTGGCGACAGCGTCCACTACCAATAGATATGGTTGAATATGCTCGGATGGATGCACACTATTTGCTTTATATTGCAGATTGTCTTGTTTCTGAGCTCAAAAACCAGAGAAACGAAAATTCAGCCAGTCTCGATGACAAATTCTATTTTGTTTCCGAGGCCAACCGGCGTTCGAATGCCTTGTGTCTGCAACTCTTCACCAAAGATCTAGAAGCTTCCCCAGGGCAGTCTGCTGCTGCTTCTATTATTTCCCGCCATTTAAATGATCATGGAAATTCTACGAACAACAGTCAGTTTCAGGATCTTGTTAGACATCTATGCTCTTGGAGGGATTTGATGGCCCGTATGCATGATGAGAGCCTTAAATACGTACTATCTGATAATGCTATCGTGTCTCTAGCTGAAAAAGTTCCATCAACTTCAACAGATATTTGCACCACAATATCACAAGCTGATATAGACATAGACTGTCTTAATTCCAATTCTACCCCTCGGCTTCCATCTTCTGTTGTTTTGAGTCACTTGGATGATTTCTCTTACCTCCTCCAAAATGAGATGAACAATCTTGATGATATATTTCAACTAATTCTCAAAAAGCACCTTGGTCCAAACGGTTCTTGTCCCTTTTCACTTTATAACTATAGTCTACTTTCTAAAGCCGACATCAAATCATCAAAGAGATTAGTTTCAAAGGAAAATGTATATAAGTTTTCAAAACAAGTTGCTCGCAAGGCTTCTCGAGAGCTTTTTGTTCAGAAGTTTTCTTGCAAATCTCCGGTGTATCATAACTGCAGGATATATGCTAATGATGGAAGATTGTTATGTTACTGTGATCGAAGGAAGCTAGAATGGTATTTGCAGCGGGACCTAGCAAAACTTGTTGATGAAGACCCACTGGCCATAATGCTTCTCTTTGAACCCAAAGGCCGCCCGGAAGATGAAGGAAATGATTTTTATATTCAAAGTAAAAAAAATATATGTGTAGGGTGTGGTGAAGGAAATCACTATTTACGGTACCGTATAATCCCATCATGCTATAGAATACACTTCCCTGAACATTTAAAAAGCCACCGATCTCATGATATTGTTTTAGTTTGTGTCGATTGCCATGAAAAAGCACATTCATCTGCTGAGAAGTACAAAAAGAAAGTAGCTTTAGAATTCGGGATACCATTATTTGTACATAAAGTGGTTAATTCTAATGAGGAACAAGAGGTTTCTGGATCTTCGACTTCTGTGTTGAAACTTGGTGATGGCGGTGTGTCTCCTTTAGAGTTGAGAACGGCTGCAATGGCCCTTATAAGGCATGGCCCACGGATGCCACCTCAGCGCCGTGAGGAATTGAAACAGGTTGTCAAGAAATATTATGGAGGAAGAGATATATCAGAGGAAGATTTAGAAAAGGCTTTACTAGTAGGAATGAGTCCTCACGAAAAAAGACGATTACAGAAAAAAAGAGGCATATCTCTTAATAACACATCTTCAAAGAACATTGCTTCAGACGAGGACATCAAGGGAAATAATTTGGATTCAGCATTTAACAAAAATGACGTTTGTGAGCCTGAAAACGGTTCTAATCTGGATGTTATGGATCCATCTGAACCAAACGGGTCGGGTAATCTGAGTTCTGAGGGGGCAGTCTTTGCTACATGTAGTTCAAAGTTATCATTATTAGGGCATGGCCCACATGGGAAACAAGTTGTTGATTATTTGCTGAAGAATCATGGAGAAAAGGGGATTCAGGAATTTTGTCAAAGATGGAGACAAGTATTTGTTGAAAGTATTAATCCTCGGTTTTTACCTGCGGGTTGGGATGTGACTCACAGTGGTAGAAGAGAGTTTGGGGACTTCAGTGTATACAATCCTGCAAATATGGCTCCTGCTGCTGCTAAGGATTAA	2628	39.35	MESKDKLKIAFTITCVAVVSILMANKFRKQRKRKQNVSSCYLKSEAKPQHNFKRVLANNSYAPFKHLKLDENSSDLHPYESEIKAILEKSELEFEFSCGIMDMSMSDTYVWVDDESKLKGLVEVLNKEIVFAVDTEQHSLRSFLGFTALIQISTRDEDYLVDTIAVHDIMGILGPVFANPNTCKVFHGADNDVIWLQRDFHIYIVNLFDTAKACDVLSKPQRSLAYLLETYCGVTTNKLYQREDWRQRPLPIDMVEYARMDAHYLLYIADCLVSELKNQRNENSASLDDKFYFVSEANRRSNALCLQLFTKDLEASPGQSAAASIISRHLNDHGNSTNNSQFQDLVRHLCSWRDLMARMHDESLKYVLSDNAIVSLAEKVPSTSTDICTTISQADIDIDCLNSNSTPRLPSSVVLSHLDDFSYLLQNEMNNLDDIFQLILKKHLGPNGSCPFSLYNYSLLSKADIKSSKRLVSKENVYKFSKQVARKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLQRDLAKLVDEDPLAIMLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLVCVDCHEKAHSSAEKYKKKVALEFGIPLFVHKVVNSNEEQEVSGSSTSVLKLGDGGVSPLELRTAAMALIRHGPRMPPQRREELKQVVKKYYGGRDISEEDLEKALLVGMSPHEKRRLQKKRGISLNNTSSKNIASDEDIKGNNLDSAFNKNDVCEPENGSNLDVMDPSEPNGSGNLSSEGAVFATCSSKLSLLGHGPHGKQVVDYLLKNHGEKGIQEFCQRWRQVFVESINPRFLPAGWDVTHSGRREFGDFSVYNPANMAPAAAKD	875

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Smso7g00234	875	SMART	35exoneu6	109	277	IPR002562	GO:0003676(InterPro)\|GO:0006139(InterPro)\|GO:0008408(InterPro)
	Smso7g00234	875	SUPERFAMILY	Ribonuclease H-like	47	280	IPR012337	-
	Smso7g00234	875	Gene3D	-	46	314	IPR036397	GO:0003676(InterPro)
	Smso7g00234	875	Gene3D	HRDC domain	330	436	IPR044876	-
	Smso7g00234	875	MobiDBLite	consensus disorder prediction	765	784	-	-
	Smso7g00234	875	Pfam	3'-5' exonuclease	109	276	IPR002562	GO:0003676(InterPro)\|GO:0006139(InterPro)\|GO:0008408(InterPro)
	Smso7g00234	875	PANTHER	POLYMYOSITIS-SCLERODERMA AUTOANTIGEN-RELATED	28	866	IPR045092	GO:0000175(PANTHER)\|GO:0000175(InterPro)\|GO:0000176(PANTHER)\|GO:0000467(PANTHER)\|GO:0000467(InterPro)\|GO:0003727(PANTHER)\|GO:0005730(PANTHER)\|GO:0071035(PANTHER)\|GO:0071036(PANTHER)\|GO:0071037(PANTHER)\|GO:0071038(PANTHER)\|GO:0071039(PANTHER)\|GO:0071040(PANTHER)\|GO:0071044(PANTHER)\|GO:0071051(PANTHER)
	Smso7g00234	875	Pfam	HRDC domain	343	386	IPR002121	GO:0003676(InterPro)
	Smso7g00234	875	SUPERFAMILY	HRDC-like	331	391	IPR010997	GO:0000166(InterPro)\|GO:0044237(InterPro)
	Smso7g00234	875	ProSiteProfiles	HRDC domain profile.	339	428	IPR002121	GO:0003676(InterPro)
	Smso7g00234	875	FunFam	Polynucleotidyl transferase ribonuclease H fold protein with HRDC domain	46	315	-	-
	Smso7g00234	875	CDD	Rrp6p-like-exo	105	288	IPR049559	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Smso7g00234	K12951	cobalt/nickel-transporting P-type ATPase D [EC:7.2.2.-]

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Smso	Smso-Chr7:4083279	Smso8g03728	Smso-Chr8:108576906	dispersed
	Smso	Smso-Chr15:4834592	Smso7g00234	Smso-Chr7:4083279	transposed
	Smso	Smso-Chr1:97709481	Smso7g00234	Smso-Chr7:4083279	transposed
	Smso	Smso-Chr29:4398152	Smso7g00234	Smso-Chr7:4083279	wgd