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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso7g00258 ATGGATTCCAGCAAGCAAACCTTTGTGGAACAAGATTCAGAGATGAAGCAAAATCTGCCATCTGACAAGATGAGGAAGAGAAAAAGAACCCCTAAAGATCCATGGGAAGTTAAATCCAAAGATAAACAGATTATGTCAGATAAACCCAAGAAAGCTTCAGGGAAGGGGAAAAAAACAAAGATTTGTGACATATATAATGATGCAGAAGATCAATATATGTGTTTGGAACGAGCAGCAATTTTTTTAGAAACTCTAGATACAGAATTACCTAAGTTTGCCAAATGTATGCTCCCGTCAAATGTTCTCTACAGTTTTTGGTTGATTTTACCGAAGAAATTCTGTGTTGTGCATTTGCCTGAACATGATGCAACAATTATTCTTGTGGATGAATCGGGAAAAGAGTTTAAGACAAATTATCTTAAAGTTAGGCACGGTTTAAGTGCTGGTTGGAGGGGTTTTTCAATTGCACAAAGGTTATTACAGGGTGACATTTTGTTTTTTCATCTCCTTGAACCCTGCAAACTACAGGTGAATATAGTAAGAAGATATGACCAAGAAGCGATAGAAGCAGCTATTTGTTTGATGGAAATGCATCCACGTGTTAGAAAAGCAAGGACATCACATTACTTTGAGAAAGCAGGGGAAGCTAAGAAAGAAAAGCTTAAGTGTAAAGAAGCTAATGAAGAAGATGAAGGTGAACCGAAGAACCAAGCCCCATTGATTTTGCAAACAAAAAAAGGCAAGAGAACGCGTAGAAGCCCAAAAAAGTTTATAACAAAACTATCACTAGATTATTGTACAACTCAATGGACCGTTGCAGAAGATAATGAAACTGAAAGGGTATCTTCTATGGAACATTGTGAAAATAGCAGCGAAGGCTTGTGCTCAGAAGTTGTTCAAGGGTCCACATCAGAAATTACCAATCAGTCACAACCCGATGAAATCGGGTGCTTCGATTTGAATCTGGGCTACCATGAGGGAAACGTCAACTGTCATTCAACCGCCGAAAGAATATTTCATTCTCCTACGGTTGAAACATAA 1041 38.04 MDSSKQTFVEQDSEMKQNLPSDKMRKRKRTPKDPWEVKSKDKQIMSDKPKKASGKGKKTKICDIYNDAEDQYMCLERAAIFLETLDTELPKFAKCMLPSNVLYSFWLILPKKFCVVHLPEHDATIILVDESGKEFKTNYLKVRHGLSAGWRGFSIAQRLLQGDILFFHLLEPCKLQVNIVRRYDQEAIEAAICLMEMHPRVRKARTSHYFEKAGEAKKEKLKCKEANEEDEGEPKNQAPLILQTKKGKRTRRSPKKFITKLSLDYCTTQWTVAEDNETERVSSMEHCENSSEGLCSEVVQGSTSEITNQSQPDEIGCFDLNLGYHEGNVNCHSTAERIFHSPTVET 346
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso7g00258 346 CDD B3-DNA 90 181 IPR003340 GO:0003677(InterPro)
Smso7g00258 346 Gene3D - 71 185 IPR015300 -
Smso7g00258 346 SUPERFAMILY DNA-binding pseudobarrel domain 85 181 IPR015300 -
Smso7g00258 346 SMART B3-2 92 183 IPR003340 GO:0003677(InterPro)
Smso7g00258 346 MobiDBLite consensus disorder prediction 1 15 - -
Smso7g00258 346 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 24 184 IPR044837 -
Smso7g00258 346 MobiDBLite consensus disorder prediction 16 56 - -
Smso7g00258 346 Pfam B3 DNA binding domain 92 182 IPR003340 GO:0003677(InterPro)
Smso7g00258 346 ProSiteProfiles B3 DNA-binding domain profile. 92 183 IPR003340 GO:0003677(InterPro)
Smso7g00258 346 MobiDBLite consensus disorder prediction 1 56 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso7g00258 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
143076 Smso10g03444 Smso7g00258
147022 Smso16g01513 Smso7g00258
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr29:4851603 Smso7g00258 Smso-Chr7:4572256 dispersed
Smso Smso-Chr10:89859893 Smso7g00258 Smso-Chr7:4572256 wgd
Smso Smso-Chr16:75833806 Smso7g00258 Smso-Chr7:4572256 wgd
Smso Smso-Chr29:4860328 Smso7g00258 Smso-Chr7:4572256 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
SmsoJAKNSE010000038g00015 . 1 482 B3 DNA Binding Superfamily AT1G19220 70.082 0.0 669.0
Smso29g00298 . 147 231 B3 DNA Binding Superfamily AT3G19184 54.118 1.26e-26 101.0
Smso29g00299 ACH 71 199 B3 DNA Binding Superfamily AT5G42700 41.86 4.08e-27 104.0
Smso29g00679 . 185 213 B3 DNA Binding Superfamily AT1G30330 75.862 9.70e-10 52.4
Smso29g00984 SST 13 353 B3 DNA Binding Superfamily AT1G59750 52.478 2.06e-113 342.0
Smso29g01140 . 84 128 B3 DNA Binding Superfamily AT1G59750 60.0 4.42e-10 56.6
Smso29g01569 . 5 777 B3 DNA Binding Superfamily AT4G32010 50.375 0.0 702.0
Smso28g01701 . 132 327 B3 DNA Binding Superfamily AT4G00260 26.131 4.11e-09 55.5
Smso27g00352 ACH,SST 246 387 B3 DNA Binding Superfamily AT4G32010 46.853 3.37e-36 134.0
Smso27g00430 . 52 850 B3 DNA Binding Superfamily AT5G62000 59.259 0.0 917.0
Smso27g01451 SST 171 289 B3 DNA Binding Superfamily AT1G05930 34.959 4.51e-10 57.4
Smso27g01528 . 13 583 B3 DNA Binding Superfamily AT2G46530 58.155 0.0 663.0
Smso27g01994 . 12 669 B3 DNA Binding Superfamily AT4G30080 56.496 0.0 688.0
Smso27g02233 . 2 667 B3 DNA Binding Superfamily AT2G28350 54.844 0.0 637.0
Smso27g02287 . 62 772 B3 DNA Binding Superfamily AT5G60450 53.752 0.0 698.0
Smso26g00208 . 1 617 B3 DNA Binding Superfamily AT4G23980 58.207 0.0 684.0
Smso26g00816 SST 18 126 B3 DNA Binding Superfamily AT5G18000 35.455 5.58e-12 63.5
Smso26g01606 . 3 663 B3 DNA Binding Superfamily AT1G59750 67.069 0.0 860.0
Smso26g02430 . 1 590 B3 DNA Binding Superfamily AT4G30080 49.753 2.75e-177 512.0
Smso25g01235 . 242 396 B3 DNA Binding Superfamily AT2G30470 47.097 4.20e-41 151.0
Smso25g01293 . 7 77 B3 DNA Binding Superfamily AT1G30330 83.099 2.21e-37 129.0
Smso25g01294 . 97 418 B3 DNA Binding Superfamily AT1G30330 82.972 0.0 541.0
Smso25g02289 . 62 772 B3 DNA Binding Superfamily AT5G60450 54.388 0.0 725.0
Smso25g02944 . 247 475 B3 DNA Binding Superfamily AT1G19850 68.122 2.87e-95 306.0
Smso24g00328 . 6 499 B3 DNA Binding Superfamily AT5G20730 65.551 0.0 620.0
Smso24g00788 . 128 167 B3 DNA Binding Superfamily AT3G61830 67.5 2.26e-11 56.2
Smso24g01202 . 605 626 B3 DNA Binding Superfamily AT3G24650 68.182 5.58e-07 43.1
Smso24g01250 . 1 802 B3 DNA Binding Superfamily AT5G37020 63.447 0.0 949.0
Smso24g01558 ACH,SST 112 230 B3 DNA Binding Superfamily AT3G19184 43.697 4.28e-28 108.0
Smso24g01962 ACH,SST 44 293 B3 DNA Binding Superfamily AT1G01030 45.833 2.64e-67 223.0
Smso24g02012 . 9 616 B3 DNA Binding Superfamily AT4G23980 57.012 0.0 668.0
Smso23g00548 . 3 444 B3 DNA Binding Superfamily AT2G33860 49.776 2.45e-131 398.0
Smso23g01195 . 45 313 B3 DNA Binding Superfamily AT3G26790 41.392 1.34e-54 177.0
Smso22g00022 . 1 485 B3 DNA Binding Superfamily AT1G19220 69.98 0.0 663.0
Smso22g00663 . 32 895 B3 DNA Binding Superfamily AT1G19850 58.09 0.0 950.0
Smso22g01261 SST 4 222 B3 DNA Binding Superfamily AT5G58280 51.982 1.60e-70 217.0
Smso21g00798 . 1 665 B3 DNA Binding Superfamily AT4G30080 52.624 0.0 644.0
Smso21g00941 . 55 340 B3 DNA Binding Superfamily AT5G62000 42.16 9.06e-68 226.0
Smso20g00115 ACH,SST 3 660 B3 DNA Binding Superfamily AT4G32010 36.441 2.40e-121 380.0
Smso20g00597 . 1 797 B3 DNA Binding Superfamily AT5G37020 57.647 0.0 845.0
Smso20g00693 . 1 508 B3 DNA Binding Superfamily AT2G33860 53.307 3.82e-177 513.0
Smso20g01798 . 381 774 B3 DNA Binding Superfamily AT4G32010 44.472 2.35e-103 321.0
Smso20g01799 . 5 356 B3 DNA Binding Superfamily AT4G32010 51.451 3.89e-109 335.0
Smso19g00591 SST 167 289 B3 DNA Binding Superfamily AT1G05930 30.534 1.37e-09 55.5
Smso19g00601 . 170 289 B3 DNA Binding Superfamily AT1G05930 30.469 3.76e-09 53.9
Smso19g00869 SST,WGDA 59 129 B3 DNA Binding Superfamily AT3G18960 30.986 1.20e-09 54.7
Smso19g00874 SST,WGDA 30 141 B3 DNA Binding Superfamily AT4G01580 30.508 1.02e-13 65.1
Smso18g00022 . 16 493 B3 DNA Binding Superfamily AT5G20730 73.402 0.0 699.0
Smso18g01170 . 148 289 B3 DNA Binding Superfamily AT1G05930 28.0 2.14e-09 54.3
Smso18g01695 . 279 388 B3 DNA Binding Superfamily AT4G32010 33.333 2.27e-08 50.8
Smso17g00093 SST 1 751 B3 DNA Binding Superfamily AT4G32010 49.875 0.0 691.0
Smso17g00504 SST 27 733 B3 DNA Binding Superfamily AT4G32010 46.855 0.0 635.0
Smso17g01081 ACH 134 222 B3 DNA Binding Superfamily AT3G19184 50.562 9.22e-28 103.0
Smso17g01561 ACH,WGDA 18 124 B3 DNA Binding Superfamily AT3G18960 29.63 1.32e-09 57.4
Smso17g01920 . 13 539 B3 DNA Binding Superfamily AT4G30080 57.063 0.0 551.0
Smso17g03094 SST 1 230 B3 DNA Binding Superfamily AT3G19184 53.306 6.20e-74 224.0
Smso17g03397 . 1 808 B3 DNA Binding Superfamily AT5G62000 58.866 0.0 902.0
Smso16g00308 . 1 806 B3 DNA Binding Superfamily AT5G62000 57.759 0.0 869.0
Smso16g00492 . 182 206 B3 DNA Binding Superfamily AT5G37020 80.0 2.52e-07 49.3
Smso16g01512 SST 8 221 B3 DNA Binding Superfamily AT3G19184 61.751 3.82e-81 242.0
Smso16g01513 ACH,SST 102 219 B3 DNA Binding Superfamily AT3G19184 42.373 4.12e-31 115.0
Smso16g02023 . 1 488 B3 DNA Binding Superfamily AT1G19220 66.272 0.0 635.0
Smso15g00068 . 296 386 B3 DNA Binding Superfamily AT4G32010 53.846 4.87e-27 110.0
Smso15g00076 . 242 395 B3 DNA Binding Superfamily AT2G30470 50.0 1.60e-43 162.0
Smso15g00784 . 32 895 B3 DNA Binding Superfamily AT1G19850 58.249 0.0 950.0
Smso15g01060 . 1 539 B3 DNA Binding Superfamily AT4G30080 55.596 0.0 548.0
Smso15g01065 . 28 90 B3 DNA Binding Superfamily AT4G30080 52.381 5.06e-18 75.1
Smso15g02002 . 13 124 B3 DNA Binding Superfamily AT3G18960 30.088 2.06e-10 58.9
Smso14g00355 . 236 475 B3 DNA Binding Superfamily AT1G19850 63.75 4.51e-94 302.0
Smso14g01491 SST 4 222 B3 DNA Binding Superfamily AT5G58280 53.304 8.49e-74 226.0
Smso14g01792 ACH 97 141 B3 DNA Binding Superfamily AT1G49475 51.111 2.67e-08 47.4
Smso14g01830 ACH,SST 115 236 B3 DNA Binding Superfamily AT3G19184 50.0 8.76e-42 144.0
Smso13g00922 SST 81 131 B3 DNA Binding Superfamily AT5G18000 40.385 7.38e-06 44.7
Smso12g00499 . 14 666 B3 DNA Binding Superfamily AT4G30080 57.848 0.0 708.0
Smso12g00783 . 62 772 B3 DNA Binding Superfamily AT5G60450 53.004 0.0 711.0
Smso12g00802 . 2 693 B3 DNA Binding Superfamily AT2G28350 52.949 0.0 671.0
Smso12g00899 SST 70 212 B3 DNA Binding Superfamily AT3G26790 40.909 4.28e-33 119.0
Smso12g01470 . 1 794 B3 DNA Binding Superfamily AT5G37020 66.141 0.0 1008.0
Smso12g03287 SST 167 289 B3 DNA Binding Superfamily AT1G05930 28.682 2.34e-09 54.7
Smso12g03689 . 6 225 B3 DNA Binding Superfamily AT4G00260 27.232 2.42e-17 78.6
Smso12g03994 . 40 469 B3 DNA Binding Superfamily AT1G19850 75.814 0.0 689.0
Smso11g00367 . 40 478 B3 DNA Binding Superfamily AT1G19850 75.399 0.0 696.0
Smso11g01590 . 1 794 B3 DNA Binding Superfamily AT5G37020 66.019 0.0 1006.0
Smso11g02175 ACH,SST 83 212 B3 DNA Binding Superfamily AT3G26790 47.692 2.91e-35 125.0
Smso11g02264 . 319 693 B3 DNA Binding Superfamily AT2G28350 45.17 7.73e-86 270.0
Smso11g02282 . 62 772 B3 DNA Binding Superfamily AT5G60450 54.267 0.0 725.0
Smso11g02596 . 1 666 B3 DNA Binding Superfamily AT4G30080 57.227 0.0 712.0
Smso10g00107 ACH,SST 3 659 B3 DNA Binding Superfamily AT4G32010 36.313 3.42e-119 374.0
Smso10g00520 . 1 797 B3 DNA Binding Superfamily AT5G37020 56.826 0.0 840.0
Smso10g00597 . 4 508 B3 DNA Binding Superfamily AT2G33860 53.816 2.87e-177 514.0
Smso10g02324 . 1 745 B3 DNA Binding Superfamily AT5G62000 57.351 0.0 781.0
Smso10g02952 . 1 488 B3 DNA Binding Superfamily AT1G19220 67.191 0.0 650.0
Smso10g03444 ACH,SST 102 219 B3 DNA Binding Superfamily AT3G19184 42.373 2.88e-31 115.0
Smso10g03445 . 8 217 B3 DNA Binding Superfamily AT3G19184 56.682 6.97e-68 210.0
Smso10g03446 SST 8 221 B3 DNA Binding Superfamily AT3G19184 50.23 1.73e-54 173.0
Smso9g00604 ACH 274 393 B3 DNA Binding Superfamily AT4G32010 42.149 6.43e-25 98.6
Smso9g00896 . 105 289 B3 DNA Binding Superfamily AT1G05930 29.534 6.69e-14 67.4
Smso8g00101 SST 38 751 B3 DNA Binding Superfamily AT4G32010 49.482 0.0 661.0
Smso8g00417 . 444 683 B3 DNA Binding Superfamily AT3G24650 60.408 2.78e-85 280.0
Smso8g00531 ACH,SST 27 733 B3 DNA Binding Superfamily AT4G32010 46.589 0.0 631.0
Smso8g01241 . 1 855 B3 DNA Binding Superfamily AT5G62000 59.375 0.0 965.0
Smso8g01308 . 496 535 B3 DNA Binding Superfamily AT3G61830 70.0 1.50e-13 62.0
Smso8g01509 SST 1 228 B3 DNA Binding Superfamily AT3G19184 53.975 6.20e-74 224.0
Smso8g02620 . 242 375 B3 DNA Binding Superfamily AT5G37020 87.313 2.31e-74 237.0
Smso8g02621 . 705 796 B3 DNA Binding Superfamily AT5G37020 78.261 5.86e-45 157.0
Smso8g03812 . 62 772 B3 DNA Binding Superfamily AT5G60450 53.104 0.0 716.0
Smso7g00258 ACH 71 199 B3 DNA Binding Superfamily AT5G42700 41.86 6.51e-28 106.0
Smso7g00871 SST 3 353 B3 DNA Binding Superfamily AT1G59750 43.784 1.96e-93 292.0
Smso6g00958 . 9 616 B3 DNA Binding Superfamily AT4G23980 56.86 0.0 667.0
Smso6g01489 ACH,SST 112 272 B3 DNA Binding Superfamily AT3G19184 38.509 1.46e-29 112.0
Smso6g01848 . 1 801 B3 DNA Binding Superfamily AT5G37020 63.062 0.0 945.0
Smso5g00351 . 15 343 B3 DNA Binding Superfamily AT1G19220 78.614 5.97e-180 527.0
Smso5g01723 . 31 590 B3 DNA Binding Superfamily AT4G30080 49.476 1.29e-164 478.0
Smso4g00799 . 12 662 B3 DNA Binding Superfamily AT4G30080 53.274 0.0 648.0
Smso4g00962 . 45 394 B3 DNA Binding Superfamily AT5G62000 44.663 3.64e-93 297.0
Smso4g02780 . 52 301 B3 DNA Binding Superfamily AT3G24650 38.645 2.64e-34 131.0
Smso4g02781 . 463 624 B3 DNA Binding Superfamily AT3G24650 34.146 1.35e-15 72.4
Smso3g00365 ACH,SST 269 398 B3 DNA Binding Superfamily AT2G30470 48.092 6.12e-35 130.0
Smso3g00437 . 18 850 B3 DNA Binding Superfamily AT5G62000 57.82 0.0 927.0
Smso3g00629 . 13 65 B3 DNA Binding Superfamily AT1G30330 58.491 2.13e-17 73.9
Smso3g01021 . 89 147 B3 DNA Binding Superfamily AT4G21550 39.344 6.55e-06 39.7
Smso3g01810 SST 168 289 B3 DNA Binding Superfamily AT1G05930 32.8 5.32e-11 60.1
Smso3g01814 . 160 339 B3 DNA Binding Superfamily AT4G30080 33.88 3.68e-22 90.5
Smso3g01901 . 13 583 B3 DNA Binding Superfamily AT2G46530 60.575 0.0 675.0
Smso3g02393 . 12 669 B3 DNA Binding Superfamily AT4G30080 55.702 0.0 684.0
Smso3g02603 . 2 662 B3 DNA Binding Superfamily AT2G28350 54.655 0.0 640.0
Smso3g02658 . 62 772 B3 DNA Binding Superfamily AT5G60450 53.699 0.0 702.0
Smso2g00212 . 62 772 B3 DNA Binding Superfamily AT5G60450 53.867 0.0 703.0
Smso2g00226 . 2 658 B3 DNA Binding Superfamily AT2G28350 41.15 1.56e-145 437.0
Smso2g00399 . 12 659 B3 DNA Binding Superfamily AT4G30080 54.948 0.0 665.0
Smso2g00874 ACH 14 555 B3 DNA Binding Superfamily AT4G21550 37.5 3.39e-97 313.0
Smso2g00924 . 3 485 B3 DNA Binding Superfamily AT2G33860 44.877 3.47e-120 369.0
Smso2g01186 . 1 808 B3 DNA Binding Superfamily AT5G37020 64.763 0.0 971.0
Smso2g01510 . 1 464 B3 DNA Binding Superfamily AT1G30330 85.563 0.0 818.0
Smso2g01609 SST 215 296 B3 DNA Binding Superfamily AT5G18000 34.94 3.12e-06 43.9
Smso2g02224 ACH 45 313 B3 DNA Binding Superfamily AT3G26790 41.392 8.65e-55 178.0
Smso1g01163 . 1 482 B3 DNA Binding Superfamily AT1G19220 70.287 0.0 671.0
Smso1g02804 . 7 616 B3 DNA Binding Superfamily AT4G23980 59.327 0.0 686.0
Smso1g03992 ACH 4 771 B3 DNA Binding Superfamily AT2G30470 43.593 0.0 620.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Smso B3 3.8e-14 CL0405 TF B3