AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Smso7g00268 | ATGGCGATTTCATCTTCTTCTGCTCACTCCCTTTCACCTTACCAATTCGCATGGCGATCTTCATCCTTTGCGTCTCCTCTGCAGATTAACCGATTCTCCTTCCATCCAATCAAATCCAATTCCAAATCCTCTCTTCGAGTCCTCGCCATGCGACGCCCATCCAAAGCAACAGTGGTGACGGGGCAGTCATGGAGTACATCAGTTCTTGACAGCAAAACCCCAGTACTAGTGGAGTTCTACGCCAGCTGGTGCGGACCGTGCCAAATGGTGCACCGCGTGATCGATGAGATTGCAGCCGAATATGCAGGGAAGGTCAACTGCTACGTGCTGAATGCTGATAAGGACCCACGAATCACAGAGGAATATGACATTAAGGCGGTCCCAATAGTGGTTTTGTTCAAGAATGGTGAGAAGTGCGAGTCAGTAGTTGGGACCATGCCTAAAGAGTTCTATGTGGCTGCCATTGAAAGGGTGTTGTCTTCTTCATCTTGA | 492 | 49.19 | MAISSSSAHSLSPYQFAWRSSSFASPLQINRFSFHPIKSNSKSSLRVLAMRRPSKATVVTGQSWSTSVLDSKTPVLVEFYASWCGPCQMVHRVIDEIAAEYAGKVNCYVLNADKDPRITEEYDIKAVPIVVLFKNGEKCESVVGTMPKEFYVAAIERVLSSSS | 163 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Smso7g00268 | 163 | FunFam | Thioredoxin | 51 | 162 | - | - | |
| Smso7g00268 | 163 | PANTHER | GEO12009P1 | 50 | 159 | - | GO:0005737(PANTHER)|GO:0015035(PANTHER) | |
| Smso7g00268 | 163 | Gene3D | Glutaredoxin | 56 | 162 | - | - | |
| Smso7g00268 | 163 | ProSiteProfiles | Thioredoxin domain profile. | 45 | 160 | IPR013766 | - | |
| Smso7g00268 | 163 | SUPERFAMILY | Thioredoxin-like | 49 | 160 | IPR036249 | - | |
| Smso7g00268 | 163 | ProSitePatterns | Thioredoxin family active site. | 76 | 94 | IPR017937 | - | |
| Smso7g00268 | 163 | PRINTS | Thioredoxin family signature | 123 | 134 | - | - | |
| Smso7g00268 | 163 | PRINTS | Thioredoxin family signature | 75 | 83 | - | - | |
| Smso7g00268 | 163 | PRINTS | Thioredoxin family signature | 83 | 92 | - | - | |
| Smso7g00268 | 163 | Pfam | Thioredoxin | 57 | 155 | IPR013766 | - | |
| Smso7g00268 | 163 | CDD | TRX-family | 67 | 156 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Smso7g00268 | K03671 | thioredoxin |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Smso | Smso-Chr7:4704507 | Smso7g00354 | Smso-Chr7:5864144 | dispersed | |
| Smso | Smso-Chr24:16386478 | Smso7g00268 | Smso-Chr7:4704507 | wgd | |
| Smso | Smso-Chr29:4968123 | Smso7g00268 | Smso-Chr7:4704507 | wgd | |
| Smso | Smso-Chr5:18105989 | Smso7g00268 | Smso-Chr7:4704507 | wgd |