AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Smso7g00280 | ATGGATATCGCACCGCACGGCGGAGTCGGAAATTTACCGGATTCTTCACCTGCTTCGTCTGTGTCTATTGATAACAGTAATTTATCGAGCAACACGTACGATGGCGATGATGAAGATGAGGATGTTTGCCGGATCTGCCGGAATCCAGGAGACGCCGATAATCCTCTCCGATATCCTTGTGCTTGTAGCGGCAGTATTAAGTTTGTTCACCAAGACTGTCTTCTTCAGTGGCTTAATCACAGCAACGCTCGTCAGTGCGAGGTATGCAAGCACCCCTTTTCATTCTCCCCTGTATATGCTGCAAACGCCCCTGGAAGGCTTCCTTTTCGGGAATTTATTATTGGGATAGCAATGAAAGCCTATACAGTGATGCAGTTCTTCATACGTTTCATTTTTGTGCTATCCATATGGCTTTTAATCATACCATTCATCACTTTCTGGATATGGAGATTCTCATTCGTTAGGAGTTTTAATGAAGCCCAGAGACTTTTCTTAAGTCACATTTCAACTATACTCATTCTCACCGACTGTCTTCACGGGTTCCTACTCTCTGCAAGCATCGTGTTTATTTTTCTTGGTGCCACATCTTTGAGGGACTATTTCCGACATTTAAGAGAACTTGGAGGGCAGGAAGGTGACAGAGAGGAAGAACTAGATAGAAACGGTGCTCGACTTGCAAGGAGACAAGGTAATCGAAACCTTGTTGGTGAAGGGAATGGTGAAGATGTTGGTGGGGCCCATGGTATTGGTGGGGCTGGTCAGATGATTAGAAGGAATGCAGAAAATGTTGCAGCCAGGTGGGAGATGCAAGCAGCTCGGCTCGAGGCACATGTAGAACAGATATTTGATGGGTTTGATGATGGTGATGGTGCAGAGGATGTTCCTTTTGATGAATTGGTTGGTATGCAGGGGCCCATTTTTCATTTGGTGGAAAATGCGTTTACTGTTCTTGCGAGCAACATGATATTTCTTGGTGTTGTAGTACTTGTACCTTTCCACCTAGGGCGCTTTTTCCTCTACCAATTATCATTTATTATATCATCTGCCACAGGCCCAATGTTTTCAACTGTTCTGCCAATTACAGAACAAGCCCTTTCACTAGCCAATATTACAGTAAAAAACACACTTACTGCAGTCACAAATTTTACATCTGGCAAAAATCCAAATGTAAATGATACATCTCTCGTTTCAGTTAATTATTTAAAAGGAGATTCCCGACTATCTGACGCTGCAACTCTTGCAGTTGGATATATTTCCATTTTCACACTGGTTATTCTCTATCTAGGAGCTATATCACTTGTTAGGTACGCCAGGGGTGAGCCTTTGACCATGAGGAGGTCTTATGATATTACTTCAATTGCAGAAACAATCCCATCCCTTTTTAGGCAGTTTTTAGCTGCAATGAGACATTTAATGACTATGATAAAGGTCGCTTTCTTATTGGTCATTGAGCTAGGGGTGTTCCCTCTAATGTGTGGATGGTGGTTAGATGTTTGTACTATAAGGATGTTTGGGAAGTCTATCGGTCAAAGAATTGACTTCTTTTCGGTTTCTCCATTGGCAAGCTCATTGATTCATTGGGTTGTAGGGATTGTCTACATGTTGCAAATATCCATATTTGTCAGTCTTCTTCGAGGGGTTTTGCGAAATGGAGTCCTTTACTTTCTGCGGGATCCAGCTGATCCTAATTACAATCCTTTTAGGGATTTAATCGATGATCCTGTGTATAAGCATGTTCGCAGGGTTCTCTTGTCAGTTGCTGTTTATGGGAGCTTAATTGTAATGCTGGTATTTTTGCCAGTTAAACTTGCTATGCGGATGGCTCCTTCCATCTTCCCTCTTGATATATCAGTATCTGACCCATTCACCGAGATCCCTGCTGACATGCTTTTATTCCAAATTTGCATTCCATTTGCTGTTGAGCATTTCAAGCCGCGGGCAACAATCAAAGCACTTCTGCACTATTGGTTTACTGCCATTGGGTGGGCCCTCGGTTTAACAGAGTACTTATTGCCCAGACCTGAAGATATTGATGGACAAGAAAATGAGAATGATCCAGCAAGGCGGGATAGGATACATGGTCAATTAGGTGGTCAACATCAAGCTGTAGCTGGATATTTACCCCCCGAAGATTTGAACCAAGCTAGTTTTGCGGAAGATGATGGTGATGAGCAATCTGATTCAGAGAGGTATATGTTTGTTCTGTGTATTGTGCTGCTTTTATTGGTGGCTTGGATGACATTGCTGATCTTCAATTCTGCTTTAATTGTGGTGCCTGTATCCCTTGGACGAATGTTGTTCAATGCAGTTCCCCTTCTCCCTATCACACATGGCATCAAATGCAATGACATATATGCGTTTGTTATTGGAAGTTATGTCATCTGGACCACACTCGCTGGCATAAGATATTGCATTGATCAAATTAGAACAAGGAGAGCTACAGTTTTACTAGGTCAAATTTGGATATGGTGTTCCATTGTTGTCAAGAGTTCTGCACTGTTGTCAATTTGGATTTTTGTTATCCCGGTGTTGATTGGTCTGCTTTTTGAACTTTTGGTAATTGTACCAATGAGGGTGCCAGTGGATGAAAGCCCAGTGTTTCTGTTGTATCAGGATTGGGCACTTGGACTTGTTTTCCTTAAGATTTGGACTCGACTGGTAATGCTGGATCACGTGATGCCTCTTATGGATGACAGCTGGCGAGTGAAATTCGAGAGAGTAAGGGAAGACGGTTTCTCCAGGCTACAAGCCTTTTGGGTGCTACGAGAGATTGTAATCCCCATCATCATTAAACTCCTTACGGCTCTATGTGTTCCTTATGTGCTAGCCCGTGGAGTGTTTCCTGTATTTGGGTACCCGTTAGTGGTTAACTCAGCTGTCTACAGATTTGCATGGCTTGGGTGCCTTGGTCTGAGTTTGTTGTGTTTTTGTGCCAAACGGTTCCATGTGTGGTTCACCAACCTCCATAACTCGATTAGAGATGACCGATATCTGATTGGCCGACGGCTTCATAACTTTGGAGAAGATAATACACAACATGAGGTTGAGACTGCAAATTTGTTGGACCCTCAGGACACTGATGTCGGTTTGAGGCATAGACGCGATATTCCGGTTGAGGGCTGA | 3123 | 43.13 | MDIAPHGGVGNLPDSSPASSVSIDNSNLSSNTYDGDDEDEDVCRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHPFSFSPVYAANAPGRLPFREFIIGIAMKAYTVMQFFIRFIFVLSIWLLIIPFITFWIWRFSFVRSFNEAQRLFLSHISTILILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQEGDREEELDRNGARLARRQGNRNLVGEGNGEDVGGAHGIGGAGQMIRRNAENVAARWEMQAARLEAHVEQIFDGFDDGDGAEDVPFDELVGMQGPIFHLVENAFTVLASNMIFLGVVVLVPFHLGRFFLYQLSFIISSATGPMFSTVLPITEQALSLANITVKNTLTAVTNFTSGKNPNVNDTSLVSVNYLKGDSRLSDAATLAVGYISIFTLVILYLGAISLVRYARGEPLTMRRSYDITSIAETIPSLFRQFLAAMRHLMTMIKVAFLLVIELGVFPLMCGWWLDVCTIRMFGKSIGQRIDFFSVSPLASSLIHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVYKHVRRVLLSVAVYGSLIVMLVFLPVKLAMRMAPSIFPLDISVSDPFTEIPADMLLFQICIPFAVEHFKPRATIKALLHYWFTAIGWALGLTEYLLPRPEDIDGQENENDPARRDRIHGQLGGQHQAVAGYLPPEDLNQASFAEDDGDEQSDSERYMFVLCIVLLLLVAWMTLLIFNSALIVVPVSLGRMLFNAVPLLPITHGIKCNDIYAFVIGSYVIWTTLAGIRYCIDQIRTRRATVLLGQIWIWCSIVVKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLVFLKIWTRLVMLDHVMPLMDDSWRVKFERVREDGFSRLQAFWVLREIVIPIIIKLLTALCVPYVLARGVFPVFGYPLVVNSAVYRFAWLGCLGLSLLCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNFGEDNTQHEVETANLLDPQDTDVGLRHRRDIPVEG | 1040 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Smso7g00280 | 1040 | Coils | Coil | 257 | 277 | - | - | |
| Smso7g00280 | 1040 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
| Smso7g00280 | 1040 | MobiDBLite | consensus disorder prediction | 13 | 32 | - | - | |
| Smso7g00280 | 1040 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 35 | 96 | IPR011016 | GO:0008270(InterPro) | |
| Smso7g00280 | 1040 | FunFam | Probable E3 ubiquitin ligase SUD1 | 28 | 101 | - | - | |
| Smso7g00280 | 1040 | SUPERFAMILY | RING-U-box | 37 | 94 | - | - | |
| Smso7g00280 | 1040 | CDD | RING-CH-C4HC3-MARCH6 | 42 | 91 | - | - | |
| Smso7g00280 | 1040 | Pfam | RING-variant domain | 43 | 89 | IPR011016 | GO:0008270(InterPro) | |
| Smso7g00280 | 1040 | ProSiteProfiles | Zinc finger RING-type profile. | 43 | 90 | IPR001841 | - | |
| Smso7g00280 | 1040 | Gene3D | Zinc-RING finger domain, C3HC4 (zinc finger) | 27 | 101 | IPR013083 | - | |
| Smso7g00280 | 1040 | SMART | ringv-2 | 42 | 90 | IPR011016 | GO:0008270(InterPro) | |
| Smso7g00280 | 1040 | PANTHER | SSM4 PROTEIN | 32 | 1016 | - | GO:0030176(PANTHER)|GO:0030433(PANTHER) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Smso7g00280 | K10661 | E3 ubiquitin-protein ligase MARCH6 [EC:2.3.2.27] |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 143085 | Smso10g03460 | Smso7g00280 | |
| 148090 | Smso18g01284 | Smso7g00280 | |
| 154186 | Smso7g00280 | Smso9g00851 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Smso | Smso-Chr18:69162918 | Smso7g00280 | Smso-Chr7:4861396 | dispersed | |
| Smso | Smso-Chr1:83367284 | Smso7g00280 | Smso-Chr7:4861396 | dispersed | |
| Smso | Smso-Chr25:19839571 | Smso7g00280 | Smso-Chr7:4861396 | dispersed | |
| Smso | Smso-Chr7:4861396 | Smso9g00851 | Smso-Chr9:22219132 | dispersed | |
| Smso | Smso-Chr29:5101657 | Smso7g00280 | Smso-Chr7:4861396 | transposed | |
| Smso | Smso-Chr29:5103836 | Smso7g00280 | Smso-Chr7:4861396 | transposed | |
| Smso | Smso-Chr29:5106289 | Smso7g00280 | Smso-Chr7:4861396 | transposed | |
| Smso | Smso-Chr10:90113997 | Smso7g00280 | Smso-Chr7:4861396 | wgd | |
| Smso | Smso-Chr24:16624267 | Smso7g00280 | Smso-Chr7:4861396 | wgd | |
| Smso | Smso-Chr29:5098974 | Smso7g00280 | Smso-Chr7:4861396 | wgd | |
| Smso | Smso-Chr5:18425178 | Smso7g00280 | Smso-Chr7:4861396 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Smso29g00316 | ACH | 67 | 252 | HMGR gene family | AT4G34100 | 66.154 | 2.85e-79 | 255.0 | |
| Smso29g00317 | . | 294 | 408 | HMGR gene family | AT4G34100 | 69.231 | 3.42e-44 | 151.0 | |
| Smso29g00318 | . | 643 | 755 | HMGR gene family | AT4G34100 | 64.706 | 9.30e-45 | 153.0 | |
| Smso29g00319 | ACH | 826 | 971 | HMGR gene family | AT4G34100 | 62.667 | 7.06e-59 | 197.0 | |
| Smso28g00501 | ACH | 68 | 132 | HMGR gene family | AT4G34100 | 34.848 | 4.45e-09 | 53.9 | |
| Smso28g00502 | SST | 68 | 125 | HMGR gene family | AT4G34100 | 35.593 | 7.95e-09 | 53.9 | |
| Smso28g00504 | SST,WGDA | 68 | 125 | HMGR gene family | AT4G34100 | 35.593 | 7.95e-09 | 53.9 | |
| Smso27g00596 | . | 68 | 129 | HMGR gene family | AT4G34100 | 40.323 | 3.22e-09 | 56.6 | |
| Smso27g02371 | . | 492 | 552 | HMGR gene family | AT1G76490 | 49.18 | 5.41e-10 | 57.4 | |
| Smso26g02816 | . | 479 | 512 | HMGR gene family | AT4G34100 | 67.647 | 9.68e-10 | 53.5 | |
| Smso25g00886 | . | 52 | 360 | HMGR gene family | AT4G34100 | 78.205 | 1.34e-158 | 470.0 | |
| Smso25g00887 | SST | 385 | 766 | HMGR gene family | AT4G34100 | 68.542 | 0.0 | 530.0 | |
| Smso25g00888 | SST | 881 | 1107 | HMGR gene family | AT4G34100 | 75.771 | 1.32e-113 | 348.0 | |
| Smso25g02480 | . | 68 | 125 | HMGR gene family | AT4G34100 | 41.379 | 2.47e-10 | 58.2 | |
| Smso25g02789 | . | 51 | 632 | HMGR gene family | AT1G76490 | 72.589 | 0.0 | 871.0 | |
| Smso24g00763 | ACH,SST,WGDA | 67 | 1067 | HMGR gene family | AT4G34100 | 71.741 | 0.0 | 1478.0 | |
| Smso24g01259 | SST | 20 | 632 | HMGR gene family | AT1G76490 | 68.78 | 0.0 | 841.0 | |
| Smso24g02780 | . | 68 | 142 | HMGR gene family | AT4G34100 | 33.333 | 1.62e-10 | 59.3 | |
| Smso23g01104 | . | 38 | 129 | HMGR gene family | AT4G34100 | 31.579 | 1.94e-09 | 56.2 | |
| Smso23g01357 | . | 68 | 118 | HMGR gene family | AT4G34100 | 45.098 | 9.40e-10 | 57.8 | |
| Smso22g01681 | . | 68 | 129 | HMGR gene family | AT4G34100 | 40.323 | 2.48e-10 | 58.9 | |
| Smso21g00054 | ACH,SST | 220 | 632 | HMGR gene family | AT1G76490 | 79.302 | 0.0 | 706.0 | |
| Smso21g00429 | . | 68 | 129 | HMGR gene family | AT4G34100 | 35.484 | 1.08e-07 | 51.6 | |
| Smso21g01309 | . | 68 | 142 | HMGR gene family | AT4G34100 | 36.0 | 3.83e-10 | 58.9 | |
| Smso21g02049 | ACH,SST | 87 | 633 | HMGR gene family | AT1G76490 | 68.727 | 0.0 | 781.0 | |
| Smso20g00758 | . | 68 | 139 | HMGR gene family | AT4G34100 | 35.616 | 7.26e-11 | 59.3 | |
| Smso19g00845 | . | 68 | 142 | HMGR gene family | AT4G34100 | 34.667 | 5.20e-10 | 58.2 | |
| Smso18g01284 | ACH,SST,WGDA | 51 | 1107 | HMGR gene family | AT4G34100 | 74.136 | 0.0 | 1581.0 | |
| Smso17g02790 | . | 68 | 124 | HMGR gene family | AT4G34100 | 43.86 | 2.42e-09 | 56.6 | |
| Smso14g00238 | . | 68 | 125 | HMGR gene family | AT4G34100 | 41.379 | 2.47e-10 | 58.2 | |
| Smso14g00554 | . | 51 | 632 | HMGR gene family | AT1G76490 | 71.574 | 0.0 | 863.0 | |
| Smso14g01996 | . | 49 | 129 | HMGR gene family | AT4G34100 | 34.568 | 3.49e-10 | 58.2 | |
| Smso13g01230 | . | 68 | 139 | HMGR gene family | AT4G34100 | 35.616 | 8.33e-10 | 56.2 | |
| Smso12g01233 | . | 68 | 132 | HMGR gene family | AT4G34100 | 36.923 | 4.07e-11 | 58.9 | |
| Smso10g00657 | ACH | 68 | 141 | HMGR gene family | AT4G34100 | 36.0 | 9.56e-11 | 58.9 | |
| Smso10g03460 | ACH,WGDA | 67 | 1107 | HMGR gene family | AT4G34100 | 58.318 | 0.0 | 1154.0 | |
| Smso9g00851 | ACH,SST,WGDA | 100 | 1102 | HMGR gene family | AT4G34100 | 71.04 | 0.0 | 1448.0 | |
| Smso8g01736 | . | 68 | 124 | HMGR gene family | AT4G34100 | 43.86 | 4.84e-09 | 55.8 | |
| Smso7g00280 | ACH | 67 | 1108 | HMGR gene family | AT4G34100 | 71.962 | 0.0 | 1492.0 | |
| Smso6g00178 | . | 68 | 141 | HMGR gene family | AT4G34100 | 33.784 | 6.68e-10 | 57.8 | |
| Smso6g01828 | SST | 51 | 632 | HMGR gene family | AT1G76490 | 72.867 | 0.0 | 857.0 | |
| Smso5g00797 | SST,WGDA | 43 | 1067 | HMGR gene family | AT4G34100 | 71.04 | 0.0 | 1475.0 | |
| Smso4g00061 | ACH,SST | 51 | 632 | HMGR gene family | AT1G76490 | 73.019 | 0.0 | 869.0 | |
| Smso4g00397 | . | 68 | 129 | HMGR gene family | AT4G34100 | 35.484 | 9.57e-08 | 51.2 | |
| Smso4g01343 | . | 68 | 142 | HMGR gene family | AT4G34100 | 36.0 | 2.74e-10 | 58.9 | |
| Smso4g02129 | ACH,SST | 142 | 633 | HMGR gene family | AT1G76490 | 70.648 | 0.0 | 722.0 | |
| Smso3g00628 | . | 68 | 129 | HMGR gene family | AT4G34100 | 40.323 | 1.93e-09 | 57.4 | |
| Smso2g01192 | . | 199 | 631 | HMGR gene family | AT1G76490 | 73.21 | 0.0 | 655.0 | |
| Smso2g02050 | . | 38 | 129 | HMGR gene family | AT4G34100 | 31.579 | 1.23e-09 | 56.6 | |
| Smso2g02618 | . | 68 | 129 | HMGR gene family | AT4G34100 | 41.935 | 3.33e-10 | 58.9 | |
| Smso1g02018 | SST,WGDA | 52 | 1107 | HMGR gene family | AT4G34100 | 74.6 | 0.0 | 1566.0 | |
| Smso1g03589 | ACH,SST,WGDA | 68 | 132 | HMGR gene family | AT4G34100 | 34.848 | 1.61e-09 | 55.5 |