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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso7g00281 ATGGCGAGTCAGGGCATCCACGGCAACCTCCTTGAAGTCACCGTTGTTAGCTGTAGTAAACTGAAGGATACGGAATGGATTTCGAGGCAAGATCCGTACGTCGGTATCGAATACGGTAGCAGTAGATCCACCACTCGTACCTGTACAGATGGAGGCAAGAACCCTACATTCCAAGAGAAGTTCGTTTTTACCCTAATTGAAGGGTTAAGAGAGCTGAATGTTTCTGTTTGGAATAGCAATACAGTCACACATGATGATTTCATCGGCAATGGAAAGATTCCATTGGCAAAAGCTATTTCTCAAGGATTTGATGATAGTAGTTGGCCGTTACAAAGTAAAACTGGCAGGCATGCCGGAGAGGTCCGAATAATAATGCATTATACTAGTGGAAATAAACCACCTAAAGATTCTGCTCAGAAACCATCAAAAGGTTTTGCACCATCAGCACCATCATATGTAGCACATAATGCACCTCCGGCGGCGATGTACTCTACACCGCCACCGGCTTATCCTCCACCAGGTGGTGCTTATCCTCAACCGTACCCCGCCTACCCACCTCATTCCTGTGCTAATTACCCACCGGCACCTTACCCACCTCAGCACGTTACTTATCCTCCTCCGCCGTATCCCCCAAATCCAGCTTACGGATCACATTATCCCCCGCCCCCTGGTTCTCCGTTCCCCGGATTGTTTCCTCCACCACCTTATTGA 711 48.1 MASQGIHGNLLEVTVVSCSKLKDTEWISRQDPYVGIEYGSSRSTTRTCTDGGKNPTFQEKFVFTLIEGLRELNVSVWNSNTVTHDDFIGNGKIPLAKAISQGFDDSSWPLQSKTGRHAGEVRIIMHYTSGNKPPKDSAQKPSKGFAPSAPSYVAHNAPPAAMYSTPPPAYPPPGGAYPQPYPAYPPHSCANYPPAPYPPQHVTYPPPPYPPNPAYGSHYPPPPGSPFPGLFPPPPY 236
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso7g00281 236 SUPERFAMILY C2 domain (Calcium-lipid-binding domain, CaLB) 8 130 IPR035892 -
Smso7g00281 236 MobiDBLite consensus disorder prediction 128 151 - -
Smso7g00281 236 ProSiteProfiles C2 domain profile. 1 109 IPR000008 -
Smso7g00281 236 PANTHER CONSERVED SERINE PROLINE-RICH PROTEIN (AFU-ORTHOLOGUE AFUA-2G01790) 1 233 IPR052981 -
Smso7g00281 236 MobiDBLite consensus disorder prediction 213 236 - -
Smso7g00281 236 Pfam C2 domain 10 100 IPR000008 -
Smso7g00281 236 Gene3D C2 domain 9 129 IPR035892 -
Smso7g00281 236 CDD C2 11 108 - -
Smso7g00281 236 PRINTS Proline rich extensin signature 166 182 - -
Smso7g00281 236 PRINTS Proline rich extensin signature 201 222 - -
Smso7g00281 236 PRINTS Proline rich extensin signature 222 236 - -
Smso7g00281 236 PRINTS Proline rich extensin signature 148 160 - -
Smso7g00281 236 PRINTS Proline rich extensin signature 187 199 - -
Smso7g00281 236 SMART C2-3c 10 107 IPR000008 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso7g00281 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
143087 Smso10g03468 Smso7g00281
147010 Smso16g01486 Smso7g00281
148091 Smso18g01291 Smso7g00281
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr18:69300649 Smso7g00281 Smso-Chr7:4884612 dispersed
Smso Smso-Chr18:69331111 Smso7g00281 Smso-Chr7:4884612 dispersed
Smso Smso-Chr10:90243663 Smso7g00281 Smso-Chr7:4884612 wgd
Smso Smso-Chr16:75158367 Smso7g00281 Smso-Chr7:4884612 wgd
Smso Smso-Chr24:16769662 Smso7g00281 Smso-Chr7:4884612 wgd